Browse Element(s) Details


OsAffx.30016.1.S1_at

Description tigr:9637.m02199
TID=OsAffx.30016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2545011/11hypothetical protein
LOC_Os06g378301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25390Os.50273.1.S1_at11/119+15221651..15225443Phospholipase D. Active site motif family protein, expressed
LOC_Os09g25400NANA9+15229072..15229649hypothetical protein
LOC_Os09g25410Os.15800.1.S1_x_at11/119+15232454..15234332expressed protein
LOC_Os09g25420OsAffx.30015.1.S1_at11/119+15234571..15236823Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25430Os.9450.1.S1_at11/119+15239462..15241481Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25440OsAffx.17889.1.S1_at10/119+15244152..15246476Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25450OsAffx.30016.1.S1_at11/119+15248651..15249123hypothetical protein
LOC_Os09g25460Os.37941.1.S1_at11/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25460OsAffx.23984.1.S1_x_at1/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25470OsAffx.30017.1.S1_at11/119+15267402..15268049hypothetical protein
LOC_Os09g25480OsAffx.10645.1.S1_at3/119+15268383..15269689hypothetical protein
LOC_Os09g25480OsAffx.10645.2.S1_x_at2/119+15268383..15269689hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30016.1.S1_at--708--1751Chr09:15249014..15249038 (25 bp)
ACCTCTGCTCGACGCTGCTTGAAGA
LOC_Os09g25450
OsAffx.30016.1.S1_at--244--9071Chr09:15248999..15249023 (25 bp)
TGCTTGAAGACACCCCTGCTCGACG
LOC_Os09g25450
OsAffx.30016.1.S1_at--813--10691Chr09:15248950..15248974 (25 bp)
TTGCCACTGCTCTAGCCGGTTTGAA
LOC_Os09g25450
OsAffx.30016.1.S1_at--1012--3831Chr09:15248948..15248968 (21 bp)
CTGCTCTAGCCGGTTTGAAAGAATG
LOC_Os09g25450
OsAffx.30016.1.S1_at--504--5553Chr11:22442763..22442785 (23 bp)
GAAAGAATGGGTGACAAGGCAGATT
NONE
OsAffx.30016.1.S1_at--663--7711Chr09:15248783..15248807 (25 bp)
GGGTGATGATTTTATAAGGCATTTG
LOC_Os09g25450
OsAffx.30016.1.S1_at--1023--1292Chr06:22387431..22387944 (25 bp)
AGAGATAGAAGCTGGGAATATACCC
LOC_Os06g37830
OsAffx.30016.1.S1_at--287--5411Chr09:15248734..15248758 (25 bp)
GAAGCTGGGAATATACCCATGGGAA
LOC_Os09g25450
OsAffx.30016.1.S1_at--156--10171Chr09:15248723..15248747 (25 bp)
TATACCCATGGGAATTTTCACCACT
LOC_Os09g25450
OsAffx.30016.1.S1_at--257--8632Chr09:15248715..15248739 (25 bp)
TGGGAATTTTCACCACTACCGGTTG
LOC_Os09g25450
OsAffx.30016.1.S1_at--368--9652Chr09:15248706..15248730 (25 bp)
TCACCACTACCGGTTGGAAAAATGT
LOC_Os09g25450
Target Sequence 
ACCTCTGCTCGACGCTGCTTGAAGACACCCCTGCTCGACGCCGCCCGACGCTGCTCCGATGCCTTTGCCACTGCTCTAGC
CGGTTTGAAAGAATGGGTGACAAGGCAGATTGGGGTGATGATTTTATAAGGCATTTGTTTGATGTTTGCAAAGAAGAGAT
AGAAGCTGGGAATATACCCATGGGAATTTTCACCACTACCGGTTGGAAAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis