Browse Element(s) Details


Os.50273.1.S1_at

Description gb:AK100975.1
DB_XREF= gi:32986184
TID=Os.50273.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143J04, full insert sequence.
FL= gb:AK100975.1 gb:AK120459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2539011/11Phospholipase D. Active site motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25370Os.33154.1.S1_s_at2/119+15203132..15206864Deoxyhypusine synthase, putative, expressed
LOC_Os09g25380Os.50892.1.S1_at11/119+15211405..15214466kinesin motor protein, putative, expressed
LOC_Os09g25390Os.50273.1.S1_at11/119+15221651..15225443Phospholipase D. Active site motif family protein, expressed
LOC_Os09g25400NANA9+15229072..15229649hypothetical protein
LOC_Os09g25410Os.15800.1.S1_x_at11/119+15232454..15234332expressed protein
LOC_Os09g25420OsAffx.30015.1.S1_at11/119+15234571..15236823Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25430Os.9450.1.S1_at11/119+15239462..15241481Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25440OsAffx.17889.1.S1_at10/119+15244152..15246476Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25450OsAffx.30016.1.S1_at11/119+15248651..15249123hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0030136cellular_componentclathrin-coated vesicle
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50273.1.S1_at--1021--9411Chr09:15222221..15222245 (25 bp)
TCGTGCACGCGTTCCGGATGTCGCT
LOC_Os09g25390
Os.50273.1.S1_at--455--8511Chr09:15222195..15222219 (25 bp)
TGGCACGAGCACCTCATGGGCCACG
LOC_Os09g25390
Os.50273.1.S1_at--176--991Chr09:15221949..15221973 (25 bp)
AGGAGGTCGTTGAAGCTTCCCGCCA
LOC_Os09g25390
Os.50273.1.S1_at--450--91Chr09:15221925..15221949 (25 bp)
ATTCTGACCACGTGACGCCCTGAGC
LOC_Os09g25390
Os.50273.1.S1_at--1134--9171Chr09:15221894..15221918 (25 bp)
TGCCGTGCCGCATGTACAAAACTTT
LOC_Os09g25390
Os.50273.1.S1_at--653--7011Chr09:15221881..15221905 (25 bp)
GTACAAAACTTTGACGCAACGATCG
LOC_Os09g25390
Os.50273.1.S1_at--439--2591Chr09:15221864..15221888 (25 bp)
AACGATCGTCTCTTCACGAAGCCGA
LOC_Os09g25390
Os.50273.1.S1_at--293--1851Chr09:15221849..15221873 (25 bp)
ACGAAGCCGAACAAGTGTACATGTT
LOC_Os09g25390
Os.50273.1.S1_at--836--7991Chr09:15221819..15221843 (25 bp)
GGATGTTGCCGAGTTTATATTGAGT
LOC_Os09g25390
Os.50273.1.S1_at--47--6491Chr09:15221786..15221810 (25 bp)
GATACGTCACTCGTGATAGCCACTG
LOC_Os09g25390
Os.50273.1.S1_at--449--7411Chr09:15221774..15221798 (25 bp)
GTGATAGCCACTGAGTGACACCAAA
LOC_Os09g25390
Target Sequence 
TCGTGCACGCGTTCCGGATGTCGCTGTGGCACGAGCACCTCATGGGCCACGCCGGCGGCGGCGGCGGCGTGTTCCTGGAG
CCGGAGAGCGCGGAGTGCGTGCGCGCGGTGCGGCGAGCGGCGGAGGCGACGTGGGACGCGTACACGCGGGACACGATGGA
GGACCTGCTGGGGCACCTGCTGCCGTTCCCGATCACCGTGTCCGAGTTCGGCGAGGTGGCCGACCTGACGGCCGACGGGT
GCTTCCCGGACACGACGGCGCCGGTGAAGGGGAGGAGGTCGTTGAAGCTTCCCGCCATTCTGACCACGTGACGCCCTGAG
CTTACCGTGCCGTGCCGCATGTACAAAACTTTGACGCAACGATCGTCTCTTCACGAAGCCGAACAAGTGTACATGTTGGA
TTGGATGTTGCCGAGTTTATATTGAGTGAATCCAAGATACGTCACTCGTGATAGCCACTGAGTGACACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis