Browse Element(s) Details


Os.50892.1.S1_at

Description gb:AK059290.1
DB_XREF= gi:32969308
TID=Os.50892.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E02, full insert sequence.
FL= gb:AK059290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2538011/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25340NANA9+15185138..15188343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25350NANA9+15189230..15190075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25360Os.14491.2.S1_x_at3/119+15190325..15192507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25360Os.47463.1.S1_x_at2/119+15190325..15192507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g25370Os.33154.1.S1_s_at2/119+15203132..15206864Deoxyhypusine synthase, putative, expressed
LOC_Os09g25380Os.50892.1.S1_at11/119+15211405..15214466kinesin motor protein, putative, expressed
LOC_Os09g25390Os.50273.1.S1_at11/119+15221651..15225443Phospholipase D. Active site motif family protein, expressed
LOC_Os09g25400NANA9+15229072..15229649hypothetical protein
LOC_Os09g25410Os.15800.1.S1_x_at11/119+15232454..15234332expressed protein
LOC_Os09g25420OsAffx.30015.1.S1_at11/119+15234571..15236823Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25430Os.9450.1.S1_at11/119+15239462..15241481Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50892.1.S1_at--868--3231Chr09:15211592..15211616 (25 bp)
CAAGAATTGGCGTGTTGCAGAGAAC
LOC_Os09g25380
Os.50892.1.S1_at--527--1171Chr09:15211567..15211591 (25 bp)
AGTACAGTATTCTTGAGGCTAAAAT
LOC_Os09g25380
Os.50892.1.S1_at--342--6191Chr09:15211553..15211577 (25 bp)
GAGGCTAAAATGATTTTCTCCAAGA
LOC_Os09g25380
Os.50892.1.S1_at--966--6531Chr09:15211542..15211566 (25 bp)
GATTTTCTCCAAGAATGACACAAAT
LOC_Os09g25380
Os.50892.1.S1_at--328--5971Chr09:15211514..15211538 (25 bp)
GAGAAATACTGGTTAGTCTTGTAGT
LOC_Os09g25380
Os.50892.1.S1_at--422--6931Chr09:15211494..15211518 (25 bp)
GTAGTAATTCCATCAATCTGACATA
LOC_Os09g25380
Os.50892.1.S1_at--644--471Chr09:15211479..15211503 (25 bp)
ATCTGACATATTGTGCTTCAGTGTT
LOC_Os09g25380
Os.50892.1.S1_at--285--4911Chr09:15211465..15211489 (25 bp)
GCTTCAGTGTTGTATGATCGGGACA
LOC_Os09g25380
Os.50892.1.S1_at--1047--6391Chr09:15211450..15211474 (25 bp)
GATCGGGACAACAAGTAATACAACA
LOC_Os09g25380
Os.50892.1.S1_at--1066--2451Chr09:15211429..15211453 (25 bp)
AACAACCATGTAGGAGCATGCCTTA
LOC_Os09g25380
Os.50892.1.S1_at--661--8071Chr09:15211417..15211441 (25 bp)
GGAGCATGCCTTAAGCTACTTTTAA
LOC_Os09g25380
Target Sequence 
CAAGAATTGGCGTGTTGCAGAGAACAGTACAGTATTCTTGAGGCTAAAATGATTTTCTCCAAGAATGACACAAATGAGGA
GAAATACTGGTTAGTCTTGTAGTAATTCCATCAATCTGACATATTGTGCTTCAGTGTTGTATGATCGGGACAACAAGTAA
TACAACAACCATGTAGGAGCATGCCTTAAGCTACTTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis