Browse Element(s) Details


OsAffx.30015.1.S1_at

Description tigr:9637.m02196
TID=OsAffx.30015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2542011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25380Os.50892.1.S1_at11/119+15211405..15214466kinesin motor protein, putative, expressed
LOC_Os09g25390Os.50273.1.S1_at11/119+15221651..15225443Phospholipase D. Active site motif family protein, expressed
LOC_Os09g25400NANA9+15229072..15229649hypothetical protein
LOC_Os09g25410Os.15800.1.S1_x_at11/119+15232454..15234332expressed protein
LOC_Os09g25420OsAffx.30015.1.S1_at11/119+15234571..15236823Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25430Os.9450.1.S1_at11/119+15239462..15241481Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25440OsAffx.17889.1.S1_at10/119+15244152..15246476Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25450OsAffx.30016.1.S1_at11/119+15248651..15249123hypothetical protein
LOC_Os09g25460Os.37941.1.S1_at11/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25460OsAffx.23984.1.S1_x_at1/119+15250888..15255324Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30015.1.S1_at--402--5371Chr09:15235115..15235139 (25 bp)
GAACCAAGGCGCAACCGAGCAATGT
LOC_Os09g25420
OsAffx.30015.1.S1_at--1109--2971Chr09:15235095..15235119 (25 bp)
AATGTGAGCCATCACGCCGAGAAGA
LOC_Os09g25420
OsAffx.30015.1.S1_at--1003--10671Chr09:15235015..15235039 (25 bp)
TTGCCAAGCTGTCTGTACCTGTGAA
LOC_Os09g25420
OsAffx.30015.1.S1_at--377--9651Chr09:15234990..15235014 (25 bp)
TCAGACTTGCAGAACCACCTTAGGG
LOC_Os09g25420
OsAffx.30015.1.S1_at--522--2231Chr09:15234908..15234932 (25 bp)
ACAATCCTCCCAAGCTTGCAAAGAA
LOC_Os09g25420
OsAffx.30015.1.S1_at--1094--1791Chr09:15234884..15234908 (25 bp)
ACCCTAATAAGCAACCCTCGGAATG
LOC_Os09g25420
OsAffx.30015.1.S1_at--1000--3771Chr09:15234868..15234892 (25 bp)
CTCGGAATGGGTTTGCAGTCTCTGC
LOC_Os09g25420
OsAffx.30015.1.S1_at--890--9511Chr09:15234850..15234874 (25 bp)
TCTCTGCCAGGCCAAATGTAACACT
LOC_Os09g25420
OsAffx.30015.1.S1_at--578--5931Chr09:15234813..15234837 (25 bp)
GAGCATCACCGCAGAAGCACGAGGC
LOC_Os09g25420
OsAffx.30015.1.S1_at--104--5291Chr09:15234725..15234749 (25 bp)
GAATGTCTTCGGATGGCTCTAGCAG
LOC_Os09g25420
OsAffx.30015.1.S1_at--1046--5251Chr09:15234614..15234638 (25 bp)
GAATGCTGGCGGATCATCTTAGTGG
LOC_Os09g25420
Target Sequence 
GAACCAAGGCGCAACCGAGCAATGTGAGCCATCACGCCGAGAAGAAGAAGAGGAAGAAGAAGAAGGAGGAGGAGGAGGAG
GCGACATGGATCTGCAGAGCTTGCCAAGCTGTCTGTACCTGTGAATCAGACTTGCAGAACCACCTTAGGGGCAGGAGGCA
TCAGCTGAAAGTTCAGGCCTTGCCTGAAGCTGCGAAACAAGAGAAGAACAATCCTCCCAAGCTTGCAAAGAACCCTAATA
AGCAACCCTCGGAATGGGTTTGCAGTCTCTGCCAGGCCAAATGTAACACTGAATCTCAGCTTGAGCATCACCGCAGAAGC
ACGAGGCACCAGCAGAAGGTAGAATCTCTTGGATGGAATGCGAAAGAGAGTGACCTGGGGACTCTGCAAGGAATGTCTTC
GGATGGCTCTAGCAGCAAGAGTGTAAAAATCTCAGCGACGATGGATAAACAGAAGGCTACGTATTTTTGCGAGGTTTGCA
GTTTGAAGTGCACCAGCCAGAGAATGCTGGCGGATCATCTTAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis