Browse Element(s) Details


OsAffx.23984.1.S1_x_at

Description tigr:9629.m06914
TID=OsAffx.23984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g402302/11expressed protein
LOC_Os09g254601/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40200Os.50809.1.S1_at11/1111+23475465..23478531expressed protein
LOC_Os11g40210Os.5804.1.S1_at11/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40210Os.10878.1.S1_at1/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40220OsAffx.19269.1.S1_at11/1111+23491967..23493016BTB/POZ domain containing protein, expressed
LOC_Os11g40230OsAffx.19270.1.S1_at11/1111+23496648..23498033expressed protein
LOC_Os11g40230OsAffx.23984.1.S1_x_at2/1111+23496648..23498033expressed protein
LOC_Os11g40240OsAffx.19271.1.S1_at11/1111+23501620..23502342Protein kinase domain containing protein, expressed
LOC_Os11g40250NANA11+23502546..23503323expressed protein
LOC_Os11g40260NANA11+23506166..23508339expressed protein
LOC_Os11g40270OsAffx.7367.1.S1_at11/1111+23511830..23512264hypothetical protein
LOC_Os11g40284Os.56524.1.S1_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.56524.1.S1_x_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.45212.1.S1_x_at1/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23984.1.S1_x_at--921--4251Chr01:40837188..40837212 (25 bp)
CCGGGTTCGTGTGGAGCGCGCGCAC
NONE
OsAffx.23984.1.S1_x_at--977--8034Chr02:11875607..11875629 (23 bp)
GGAGCAAGCTCCTCTTCGCCGTGGA
NONE
OsAffx.23984.1.S1_x_at--771--3232Chr01:40837246..40837270 (25 bp)
CAAGCTCCTCTTCGCCGTGGACGGG
NONE
OsAffx.23984.1.S1_x_at--944--7012Chr01:40837306..40837330 (25 bp)
GTACTTCGGCAACGCCATCGTGCTG
NONE
OsAffx.23984.1.S1_x_at--251--9451Chr01:40837311..40837335 (25 bp)
TCGGCAACGCCATCGTGCTGACCAG
NONE
OsAffx.23984.1.S1_x_at--72--7771Chr01:40837405..40837429 (25 bp)
GGTGACGGACGCGTACATGCGCTCC
NONE
OsAffx.23984.1.S1_x_at--206--4651Chr01:40837415..40837439 (25 bp)
GCGTACATGCGCTCCGCGGTGGACT
NONE
OsAffx.23984.1.S1_x_at--1144--9291Chr01:40837427..40837451 (25 bp)
TCCGCGGTGGACTACTTCGAGGCGA
NONE
OsAffx.23984.1.S1_x_at--388--4091Chr01:40837476..40837500 (25 bp)
CGACGCTGCTGATCACGGCGTGGTC
NONE
OsAffx.23984.1.S1_x_at--418--10651Chr01:40837511..40837535 (25 bp)
TTCCGCGCCGCCGACTTTGGGTGGG
NONE
OsAffx.23984.1.S1_x_at--68--8231Chr01:40837587..40837611 (25 bp)
TGTTCCTGTCGTGCGCCGGCGAGGG
NONE
Target Sequence 
CCGGGTTCGTGTGGAGCGCGCGCACGGCGGCGCTGGGGATGGGGCGCGCGCGGCGGAGCAAGCTCCTCTTCGCCGTGGAC
GGGCGGCCGCGGTTCACCGCGCCGCCGCTCCCGGCGGGGTACTTCGGCAACGCCATCGTGCTGACCAGCGCCGCGTGCGC
CGCCGGCGAGCTGTCGCCCGCGCGCGCCGTGCGGCTGGTGCGCGGCGCCGCGGAGGCGGTGACGGACGCGTACATGCGCT
CCGCGGTGGACTACTTCGAGGCGACGCGGGCGCGGCCGTCGCTGGCGTCGACGCTGCTGATCACGGCGTGGTCGCGGCTG
CCGTTCCGCGCCGCCGACTTTGGGTGGGGCCCGCCCGCGGCGTACGGCCCCGCAGCGCTGCCGGAGAGGGAGGTGGCGCT
GTTCCTGTCGTGCGCCGGCGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23984.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis