Browse Element(s) Details


OsAffx.19271.1.S1_at

Description tigr:9639.m03681
TID=OsAffx.19271.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161578 protein kinase-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4024011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40200Os.50809.1.S1_at11/1111+23475465..23478531expressed protein
LOC_Os11g40210Os.5804.1.S1_at11/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40210Os.10878.1.S1_at1/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40220OsAffx.19269.1.S1_at11/1111+23491967..23493016BTB/POZ domain containing protein, expressed
LOC_Os11g40230OsAffx.19270.1.S1_at11/1111+23496648..23498033expressed protein
LOC_Os11g40230OsAffx.23984.1.S1_x_at2/1111+23496648..23498033expressed protein
LOC_Os11g40240OsAffx.19271.1.S1_at11/1111+23501620..23502342Protein kinase domain containing protein, expressed
LOC_Os11g40250NANA11+23502546..23503323expressed protein
LOC_Os11g40260NANA11+23506166..23508339expressed protein
LOC_Os11g40270OsAffx.7367.1.S1_at11/1111+23511830..23512264hypothetical protein
LOC_Os11g40284Os.56524.1.S1_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.56524.1.S1_x_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.45212.1.S1_x_at1/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40300NANA11+23526672..23529000hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19271.1.S1_at--402--2771Chr11:23502160..23502184 (25 bp)
AAGACGAGTGAGAGCTGCCTCCAGC
LOC_Os11g40240
OsAffx.19271.1.S1_at--1061--1511Chr11:23502032..23502056 (25 bp)
AGCTTAGCAACTTTACCATGTCCCA
LOC_Os11g40240
OsAffx.19271.1.S1_at--495--771Chr11:23502015..23502039 (25 bp)
ATGTCCCATCTGCTGCAATACACTT
LOC_Os11g40240
OsAffx.19271.1.S1_at--620--3091Chr11:23501999..23502023 (25 bp)
AATACACTTCCAAACCTGTCTCGTT
LOC_Os11g40240
OsAffx.19271.1.S1_at--380--6651Chr11:23501944..23501968 (25 bp)
GTTGATTGGTTCTGACACCCACAAG
LOC_Os11g40240
OsAffx.19271.1.S1_at--674--5711Chr11:23501920..23501944 (25 bp)
GACTCAGTTAGATGTGTCCGCTCTG
LOC_Os11g40240
OsAffx.19271.1.S1_at--639--9291Chr11:23501904..23501928 (25 bp)
TCCGCTCTGGGCATTATACTTTTGC
LOC_Os11g40240
OsAffx.19271.1.S1_at--730--7511Chr11:23501760..23501784 (25 bp)
GTGGATCCTGACCTGAAGAAATGCC
LOC_Os11g40240
OsAffx.19271.1.S1_at--400--691Chr11:23501729..23501753 (25 bp)
ATGACGCCGCAGAGATGCTGTTCCT
LOC_Os11g40240
OsAffx.19271.1.S1_at--545--691Chr11:23501681..23501705 (25 bp)
ATGAGAAACATCGTCCAGACCTCGC
LOC_Os11g40240
OsAffx.19271.1.S1_at--208--1391Chr11:23501665..23501689 (25 bp)
AGACCTCGCAGCTGATGTGTGGCCA
LOC_Os11g40240
Target Sequence 
AAGACGAGTGAGAGCTGCCTCCAGCATATGCTCCGCTCTCATCTTCCTCCACAACACCGAGCCCTACCCAATCGTCCATG
GTAATCTCAAAACGAGCAACATCCTCTTCAGCAAAGACAATGTATGCAAGCTTAGCAACTTTACCATGTCCCATCTGCTG
CAATACACTTCCAAACCTGTCTCGTTTTGGGGTGGTGTTAAGGGATTTGCAAGAATGTTGATTGGTTCTGACACCCACAA
GACTCAGTTAGATGTGTCCGCTCTGGGCATTATACTTTTGCAACTTGTTACAGCACAAGAACCAAAGGATTTGAGAAAGA
ATGTGCTCAGCAAACTAGGAGATATTATACGATTCCAAGGAAAGAGCATGGAGCAGCAACATGAGGTCCTAAAAAGCATT
GTGGATCCTGACCTGAAGAAATGCCAGTTAGATGACGCCGCAGAGATGCTGTTCCTGGGATTGAAATGCAGTGATCCAAA
TGAGAAACATCGTCCAGACCTCGCAGCTGATGTGTGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis