Browse Element(s) Details


OsAffx.7367.1.S1_at

Description tigr:9639.m03684
TID=OsAffx.7367.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4027011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40220OsAffx.19269.1.S1_at11/1111+23491967..23493016BTB/POZ domain containing protein, expressed
LOC_Os11g40230OsAffx.19270.1.S1_at11/1111+23496648..23498033expressed protein
LOC_Os11g40230OsAffx.23984.1.S1_x_at2/1111+23496648..23498033expressed protein
LOC_Os11g40240OsAffx.19271.1.S1_at11/1111+23501620..23502342Protein kinase domain containing protein, expressed
LOC_Os11g40250NANA11+23502546..23503323expressed protein
LOC_Os11g40260NANA11+23506166..23508339expressed protein
LOC_Os11g40270OsAffx.7367.1.S1_at11/1111+23511830..23512264hypothetical protein
LOC_Os11g40284Os.56524.1.S1_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.56524.1.S1_x_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.45212.1.S1_x_at1/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40300NANA11+23526672..23529000hypothetical protein
LOC_Os11g40310NANA11+23530157..23530441hypothetical protein
LOC_Os11g40320OsAffx.19272.1.S1_s_at11/1111+23536078..23538270expressed protein
LOC_Os11g40320OsAffx.19272.1.S1_at11/1111+23536078..23538270expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7367.1.S1_at--773--8471Chr11:23511860..23511884 (25 bp)
TGGCTGCCTACGGTGGAAGGCGACG
LOC_Os11g40270
OsAffx.7367.1.S1_at--199--2231Chr11:23512002..23512026 (25 bp)
ACAATGGAGGATGTTGCAATGGCAG
LOC_Os11g40270
OsAffx.7367.1.S1_at--262--2971Chr11:23512019..23512043 (25 bp)
AATGGCAGCATGGTGGGTGCGGACA
LOC_Os11g40270
OsAffx.7367.1.S1_at--1035--7731Chr11:23512034..23512058 (25 bp)
GGTGCGGACACGGTATCAACGCCTG
LOC_Os11g40270
OsAffx.7367.1.S1_at--961--8131Chr11:23512039..23512063 (25 bp)
GGACACGGTATCAACGCCTGGAAAT
LOC_Os11g40270
OsAffx.7367.1.S1_at--186--6031Chr11:23512080..23512104 (25 bp)
GAGAGGAGGCACGAACGGCGACAGC
LOC_Os11g40270
OsAffx.7367.1.S1_at--9--8011Chr11:23512108..23512132 (25 bp)
GGAGGCATGGCAGATGACTGTATTT
LOC_Os11g40270
OsAffx.7367.1.S1_at--1109--5031Chr11:23512117..23512141 (25 bp)
GCAGATGACTGTATTTGCGCGGCAG
LOC_Os11g40270
OsAffx.7367.1.S1_at--1060--3691Chr11:23512164..23512188 (25 bp)
CTAGCTTGACGCGTAGAGCCGTGGT
LOC_Os11g40270
OsAffx.7367.1.S1_at--1029--9991Chr11:23512165..23512189 (25 bp)
TAGCTTGACGCGTAGAGCCGTGGTC
LOC_Os11g40270
OsAffx.7367.1.S1_at--521--1831Chr11:23512172..23512196 (25 bp)
ACGCGTAGAGCCGTGGTCGGTGGCA
LOC_Os11g40270
Target Sequence 
TGGCTGCCTACGGTGGAAGGCGACGGCGGCGGCGGCGGCGGCGACGGCGGTAGCTGCTGTGGTGGTGGCAGCTGCAGGGG
TGGTGGCAGCGGCTGGGGCAGCTCCAGTAGTGGTGGCGGCGGCGGTGGACGCGTCGTCGGCAACAATGGAGGATGTTGCA
ATGGCAGCATGGTGGGTGCGGACACGGTATCAACGCCTGGAAATGGGCGACGGCGACTGCGAGAGGAGGCACGAACGGCG
ACAGCCGGGGAGGCATGGCAGATGACTGTATTTGCGCGGCAGCGGCAGGAGGAGTGCTCGGGGGCTAGCTTGACGCGTAG
AGCCGTGGTCGGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis