Browse Element(s) Details


OsAffx.19270.1.S1_at

Description tigr:9639.m03680
TID=OsAffx.19270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4023011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40200Os.50809.1.S1_at11/1111+23475465..23478531expressed protein
LOC_Os11g40210Os.5804.1.S1_at11/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40210Os.10878.1.S1_at1/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40220OsAffx.19269.1.S1_at11/1111+23491967..23493016BTB/POZ domain containing protein, expressed
LOC_Os11g40230OsAffx.19270.1.S1_at11/1111+23496648..23498033expressed protein
LOC_Os11g40230OsAffx.23984.1.S1_x_at2/1111+23496648..23498033expressed protein
LOC_Os11g40240OsAffx.19271.1.S1_at11/1111+23501620..23502342Protein kinase domain containing protein, expressed
LOC_Os11g40250NANA11+23502546..23503323expressed protein
LOC_Os11g40260NANA11+23506166..23508339expressed protein
LOC_Os11g40270OsAffx.7367.1.S1_at11/1111+23511830..23512264hypothetical protein
LOC_Os11g40284Os.56524.1.S1_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.56524.1.S1_x_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.45212.1.S1_x_at1/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19270.1.S1_at--514--8811Chr11:23497443..23497467 (25 bp)
TGTTGCGTTGCATACAGTTGGCTGT
LOC_Os11g40230
OsAffx.19270.1.S1_at--1038--3431Chr11:23497429..23497453 (25 bp)
CAGTTGGCTGTGTTAGAATCTGGCA
LOC_Os11g40230
OsAffx.19270.1.S1_at--355--5231Chr11:23497269..23497438 (25 bp)
GAATCTGGCAGCAGCCGTTAAACTG
LOC_Os11g40230
OsAffx.19270.1.S1_at--26--4431Chr11:23497256..23497277 (22 bp)
GCCGTTAAACTGTTCACGTTCGACA
LOC_Os11g40230
OsAffx.19270.1.S1_at--889--4891Chr11:23497245..23497269 (25 bp)
GTTCACGTTCGACAAAAGGTTCAGA
LOC_Os11g40230
OsAffx.19270.1.S1_at--733--6011Chr11:23497134..23497232 (25 bp)
GAGAGTGAGAGTTCGTGACTCAAGT
LOC_Os11g40230
OsAffx.19270.1.S1_at--866--6711Chr11:23497124..23497144 (21 bp)
GTTCGTGACTCAAGTGCGATGGGTT
LOC_Os11g40230
OsAffx.19270.1.S1_at--450--811Chr11:23497106..23497130 (25 bp)
ATGGGTTCGTGCTCGGTCTCGCCAT
LOC_Os11g40230
OsAffx.19270.1.S1_at--1042--7851Chr11:23496865..23496889 (25 bp)
GGTTCACGTCCGAGTCAATCGCCCA
LOC_Os11g40230
OsAffx.19270.1.S1_at--371--7251Chr11:23496858..23496882 (25 bp)
GTCCGAGTCAATCGCCCACGTCAAG
LOC_Os11g40230
OsAffx.19270.1.S1_at--855--9711Chr11:23496838..23496862 (25 bp)
TCAAGGCGCTCGTCTCGGTCGACGG
LOC_Os11g40230
Target Sequence 
TGTTGCGTTGCATACAGTTGGCTGTGTTAGAATCTGGCAGCAGCCGTTAAACTGTTCACGTTCGACAAAAGGTTCAGAGA
TTGTGAGAGTGAGAGTGAGAGTTCGTGACTCAAGTGCGATGGGTTCGTGCTCGGTCTCGCCATCAACCACTGCATGTTCA
ACGGCGTCGGCGTCATGCAGTTCGTCAACTCGGGGTGTGCCGCTCTCCGTCCCGCCGGCGCTCGACCGCGCCCTGCTCCG
CGCGCGCGACCCCCCGCAGGTCGCGTTCCTGCACCACGAGTTCACGCAGATCGACGACGGTGATGACGGCGGCTCGCCGG
CGCAGAACGGCGCCGAGCCGTTCCTGCACAGGTCGTTCCGGTTCACGTCCGAGTCAATCGCCCACGTCAAGGCGCTCGTC
TCGGTCGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis