Browse Element(s) Details


Os.50809.1.S1_at

Description gb:AK069189.1
DB_XREF= gi:32979213
TID=Os.50809.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004N19, full insert sequence.
FL= gb:AK058716.1 gb:AK069189.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4020011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40170OsAffx.7363.1.S1_at11/1111+23451404..23451835hypothetical protein
LOC_Os11g40180OsAffx.7364.1.S1_at10/1111+23463554..23467573dirigent, putative
LOC_Os11g40180Os.53709.1.S1_at1/1111+23463554..23467573dirigent, putative
LOC_Os11g40189NANA11+23469954..23470244NA
LOC_Os11g40200Os.50809.1.S1_at11/1111+23475465..23478531expressed protein
LOC_Os11g40210Os.5804.1.S1_at11/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40210Os.10878.1.S1_at1/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40220OsAffx.19269.1.S1_at11/1111+23491967..23493016BTB/POZ domain containing protein, expressed
LOC_Os11g40230OsAffx.19270.1.S1_at11/1111+23496648..23498033expressed protein
LOC_Os11g40230OsAffx.23984.1.S1_x_at2/1111+23496648..23498033expressed protein
LOC_Os11g40240OsAffx.19271.1.S1_at11/1111+23501620..23502342Protein kinase domain containing protein, expressed
LOC_Os11g40250NANA11+23502546..23503323expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50809.1.S1_at--372--3111Chr11:23478140..23478164 (25 bp)
CAATAAGCGGAGGATCGGGCCATTT
LOC_Os11g40200
Os.50809.1.S1_at--935--6391Chr11:23478152..23478176 (25 bp)
GATCGGGCCATTTTGATGTCAATTT
LOC_Os11g40200
Os.50809.1.S1_at--621--851Chr11:23478183..23478207 (25 bp)
ATGGCAGATCCTTTGGAGCTACGAA
LOC_Os11g40200
Os.50809.1.S1_at--805--5951Chr11:23478213..23478237 (25 bp)
GAGAAGTACATTGGTTCCTTGTTTT
LOC_Os11g40200
Os.50809.1.S1_at--44--3831Chr11:23478260..23478284 (25 bp)
CTGCCTGTACTATCTCATTTCTAAG
LOC_Os11g40200
Os.50809.1.S1_at--108--8811Chr11:23478309..23478333 (25 bp)
TGTTGTCACGTTCTGCATTGTAAAT
LOC_Os11g40200
Os.50809.1.S1_at--40--2291Chr11:23478334..23478358 (25 bp)
AAATGCCTGCAGAAGTGTGTCTAGA
LOC_Os11g40200
Os.50809.1.S1_at--439--6051Chr11:23478406..23478430 (25 bp)
GAGTTCTGACCACCACAATTTTAGC
LOC_Os11g40200
Os.50809.1.S1_at--263--5071Chr11:23478429..23478453 (25 bp)
GCAGCTAAACTCATGGCTCTCAATT
LOC_Os11g40200
Os.50809.1.S1_at--1132--6971Chr11:23478466..23478490 (25 bp)
GTACCTAATTCGATCTGTGCTACTT
LOC_Os11g40200
Os.50809.1.S1_at--630--7311Chr11:23478482..23478506 (25 bp)
GTGCTACTTCCATTGACTAGTTGCA
LOC_Os11g40200
Target Sequence 
CAATAAGCGGAGGATCGGGCCATTTTGATGTCAATTTGATTGAATGGCAGATCCTTTGGAGCTACGAAAAGCAGAGAAGT
ACATTGGTTCCTTGTTTTGACAACAACTCTTCCAACTGTCCTGCCTGTACTATCTCATTTCTAAGGATTTCACTAAGGAA
GCATTATAATGTTGTCACGTTCTGCATTGTAAATAAATGCCTGCAGAAGTGTGTCTAGAATAGTGGCAAAAGAAGTTACC
CTCAAATGACTTGAAAATTGACTTCTGAGTTCTGACCACCACAATTTTAGCAGCTAAACTCATGGCTCTCAATTGTAATT
ATTTATGTACCTAATTCGATCTGTGCTACTTCCATTGACTAGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis