Browse Element(s) Details


OsAffx.7363.1.S1_at

Description tigr:9639.m03672
TID=OsAffx.7363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4017011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed
LOC_Os11g40150Os.57536.1.S1_at11/1111+23441360..23445273DNA repair protein RAD51 homolog A, putative, expressed
LOC_Os11g40160Os.51651.1.A1_at11/1111+23445716..23447986expressed protein
LOC_Os11g40170OsAffx.7363.1.S1_at11/1111+23451404..23451835hypothetical protein
LOC_Os11g40180OsAffx.7364.1.S1_at10/1111+23463554..23467573dirigent, putative
LOC_Os11g40180Os.53709.1.S1_at1/1111+23463554..23467573dirigent, putative
LOC_Os11g40189NANA11+23469954..23470244NA
LOC_Os11g40200Os.50809.1.S1_at11/1111+23475465..23478531expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7363.1.S1_at--85--2191Chr11:23451661..23451681 (21 bp)
ACAAAGTTTGCGAGGTTGCATACAT
LOC_Os11g40170
OsAffx.7363.1.S1_at--696--7591Chr11:23451634..23451658 (25 bp)
GGGCAGAAGGACGTCAAGCAACAAC
LOC_Os11g40170
OsAffx.7363.1.S1_at--30--8111Chr11:23451626..23451650 (25 bp)
GGACGTCAAGCAACAACGAGATGAT
LOC_Os11g40170
OsAffx.7363.1.S1_at--591--1871Chr11:23451611..23451635 (25 bp)
ACGAGATGATCGAACGGCGGACTTG
LOC_Os11g40170
OsAffx.7363.1.S1_at--20--6131Chr11:23451542..23451566 (25 bp)
GAGGGACTACGAGCCTCCGGAGCAT
LOC_Os11g40170
OsAffx.7363.1.S1_at--380--8071Chr11:23451524..23451548 (25 bp)
GGAGCATCTGGAGCTTCTCGTCACA
LOC_Os11g40170
OsAffx.7363.1.S1_at--20--5931Chr11:23451514..23451538 (25 bp)
GAGCTTCTCGTCACAGACCTCGGCG
LOC_Os11g40170
OsAffx.7363.1.S1_at--300--1391Chr11:23451500..23451524 (25 bp)
AGACCTCGGCGTTCTGCAGCCGTTA
LOC_Os11g40170
OsAffx.7363.1.S1_at--637--5071Chr11:23451485..23451509 (25 bp)
GCAGCCGTTAGCGAGGTGCTTATTA
LOC_Os11g40170
OsAffx.7363.1.S1_at--242--7311Chr11:23451470..23451494 (25 bp)
GTGCTTATTAAGCTCTCTAATGTCG
LOC_Os11g40170
OsAffx.7363.1.S1_at--958--1551Chr11:23451460..23451484 (25 bp)
AGCTCTCTAATGTCGCAAAATTCAG
LOC_Os11g40170
Target Sequence 
ACAAAGTTTGCGAGGTTGCATACATTGGGGCAGAAGGACGTCAAGCAACAACGAGATGATCGAACGGCGGACTTGGGCGG
TGCGCCGGTGACACCGAGCGTGGACGTCGAGGCGCCGGCGAGGGACTACGAGCCTCCGGAGCATCTGGAGCTTCTCGTCA
CAGACCTCGGCGTTCTGCAGCCGTTAGCGAGGTGCTTATTAAGCTCTCTAATGTCGCAAAATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis