Browse Element(s) Details


Os.57536.1.S1_at

Description gb:AB080262.1
DB_XREF= gi:18874070
GEN=OsRad51A1
TID=Os.57536.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57536 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRad51A1 mRNA for Rad51, complete cds.
PROD=Rad51
FL= gb:AB080262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4015011/11DNA repair protein RAD51 homolog A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed
LOC_Os11g40150Os.57536.1.S1_at11/1111+23441360..23445273DNA repair protein RAD51 homolog A, putative, expressed
LOC_Os11g40160Os.51651.1.A1_at11/1111+23445716..23447986expressed protein
LOC_Os11g40170OsAffx.7363.1.S1_at11/1111+23451404..23451835hypothetical protein
LOC_Os11g40180OsAffx.7364.1.S1_at10/1111+23463554..23467573dirigent, putative
LOC_Os11g40180Os.53709.1.S1_at1/1111+23463554..23467573dirigent, putative
LOC_Os11g40189NANA11+23469954..23470244NA

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006281biological_processDNA repair
GO:0006302biological_processdouble-strand break repair
GO:0007126biological_processmeiosis
GO:0007131biological_processmeiotic recombination
GO:0009314biological_processresponse to radiation
GO:0000150molecular_functionrecombinase activity
GO:0003684molecular_functiondamaged DNA binding
GO:0003697molecular_functionsingle-stranded DNA binding
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57536.1.S1_at--1019--2691Chr11:23444906..23444930 (25 bp)
AAGCTCTCCATGCTTGGCTGAAGCC
LOC_Os11g40150
Os.57536.1.S1_at--525--4511Chr11:23444928..23444952 (25 bp)
GCCGAAGCAAGGTTTCAGATAGCAT
LOC_Os11g40150
Os.57536.1.S1_at--265--9511Chr11:23444987..23445011 (25 bp)
TCTCTGCTCAGTGCTAAGCGCTAAC
LOC_Os11g40150
Os.57536.1.S1_at--1127--9791Chr11:23445001..23445025 (25 bp)
TAAGCGCTAACTGGCAACAGCTTCC
LOC_Os11g40150
Os.57536.1.S1_at--757--1231Chr11:23445027..23445051 (25 bp)
AGTTCCCACATGTGTTGCTCTCCTG
LOC_Os11g40150
Os.57536.1.S1_at--157--8831Chr11:23445053..23445077 (25 bp)
TGATTGCGCTACCACCCCTGAAGGG
LOC_Os11g40150
Os.57536.1.S1_at--1159--2551Chr11:23445081..23445105 (25 bp)
AACTGATGTGATGCTCCTGTTCTGA
LOC_Os11g40150
Os.57536.1.S1_at--504--6711Chr11:23445099..23445123 (25 bp)
GTTCTGAATCCGACAACCACTTATT
LOC_Os11g40150
Os.57536.1.S1_at--756--7331Chr11:23445135..23445159 (25 bp)
GTGCACATCTGTGTCACTGTTGTAG
LOC_Os11g40150
Os.57536.1.S1_at--1128--6771Chr11:23445167..23445191 (25 bp)
GTATAAAACGTTGTCTGCCCTGCAA
LOC_Os11g40150
Os.57536.1.S1_at--621--9152Chr11:23445182..23445206 (25 bp)
TGCCCTGCAAGGCTGCAATGCATGT
LOC_Os11g40150
Target Sequence 
AAGCTCTCCATGCTTGGCTGAAGCCGAAGCAAGGTTTCAGATAGCATCTGAAGGCGTTGCAGATGTCAAGGATTGAGACA
NTCTCTGCTCAGTGCTAAGCGCTAACTGGCAACAGCTTCCCAGTTCCCACATGTGTTGCTCTCCTGCTGATTGCGCTACC
ACCCCTGAAGGGTTCAACTGATGTGATGCTCCTGTTCTGAATCCGACAACCACTTATTGTCGAGTGGNGGTGCACATCTG
TGTCACTGTTGTAGTGTTGTAGTATAAAACGTTGTCTGCCCTGCAAGGCTGCAATGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis