Browse Element(s) Details


Os.3705.1.S1_at

Description gb:AB026561.1
DB_XREF= gi:8671497
GEN=OsPAE1
TID=Os.3705.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3705 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPAE1 mRNA for alpha 5 subunit of 20S proteasome, complete cds.
PROD=alpha 5 subunit of 20S proteasome
FL= gb:AK103487.1 gb:AK059521.1 gb:AB026561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4014011/11Proteasome subunit alpha type 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40090Os.9751.1.S1_at11/1111+23408541..23411972expressed protein
LOC_Os11g40100Os.8848.1.S1_at11/1111+23412375..23415910SSXT protein containing protein, expressed
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed
LOC_Os11g40150Os.57536.1.S1_at11/1111+23441360..23445273DNA repair protein RAD51 homolog A, putative, expressed
LOC_Os11g40160Os.51651.1.A1_at11/1111+23445716..23447986expressed protein
LOC_Os11g40170OsAffx.7363.1.S1_at11/1111+23451404..23451835hypothetical protein
LOC_Os11g40180OsAffx.7364.1.S1_at10/1111+23463554..23467573dirigent, putative
LOC_Os11g40180Os.53709.1.S1_at1/1111+23463554..23467573dirigent, putative

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005819cellular_componentspindle
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0009524cellular_componentphragmoplast
GO:0019773cellular_componentproteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3705.1.S1_at--1049--9511Chr11:23438625..23438649 (25 bp)
TCTCTCTCCTTATTGCTGGTCATGA
LOC_Os11g40140
Os.3705.1.S1_at--374--1531Chr11:23437929..23437948 (20 bp)
AGCTTGTACTACACTGACCCATCAG
LOC_Os11g40140
Os.3705.1.S1_at--345--3771Chr11:23437916..23437940 (25 bp)
CTGACCCATCAGGAACCTTTTGGCA
LOC_Os11g40140
Os.3705.1.S1_at--460--3211Chr11:23437882..23437906 (25 bp)
CAAGGCAATTGGATCAGGTTCTGAA
LOC_Os11g40140
Os.3705.1.S1_at--879--1371Chr11:23437408..23437432 (25 bp)
AGACCATAGCCCTGTCTATCTTGAA
LOC_Os11g40140
Os.3705.1.S1_at--293--4351Chr11:23437243..23437267 (25 bp)
TCGCAAAGGTTTCTCCCAACTACCA
LOC_Os11g40140
Os.3705.1.S1_at--81--5351Chr11:23437172..23437196 (25 bp)
GAAGATTGCCATCGCGTGTTATTTT
LOC_Os11g40140
Os.3705.1.S1_at--549--6551Chr11:23437107..23437131 (25 bp)
GATTATCAGTCCATTGTTTGCTATG
LOC_Os11g40140
Os.3705.1.S1_at--390--4871Chr11:23437088..23437112 (25 bp)
GCTATGGCTGTCATGTTATGTTAAC
LOC_Os11g40140
Os.3705.1.S1_at--290--3111Chr11:23437029..23437053 (25 bp)
AATAGTCTGGTGTGCAGCCCAGTCA
LOC_Os11g40140
Os.3705.1.S1_at--1125--1651Chr11:23437014..23437038 (25 bp)
AGCCCAGTCATTTGCTTGTTTTCAG
LOC_Os11g40140
Target Sequence 
TCTCTCTCCTTATTGCTGGTCATGATGAGAANGGACCCAGCTTGTACTACACTGACCCATCAGGAACCTTTTGGCANTGC
AATGCCAAGGCAATTGGATCAGGTTCTGAAGGAGCTGATAGCTCATTACAGGAGCAGTACAATAAGGANTTGACCCTNCA
GGAGGCTGAGACCATAGCCCTGTCTATCTTGAAGCAGGTTATGGANGAAAAGGTTACNCCAAACAACGTCGATATCGCAA
AGGTTTCTCCCAACTACCACCTCTNACACCCCTGCNGAGGTTGAAGCTGTCATTGCNCGGTTGTGAGAAGATTGCCATCG
CGTGTTATTTTNATCAGCCCTAAGACAGNCTCTGTATGAACTTCCTAAATGGATTATCAGTCCATTGTTTGCTATGGCTG
TCATGTTATGTTAACNAGATAGTGGCTGCTAGAGTTTATTACTGNCTCTAATAGTCTGGTGTGCAGCCCAGTCATTTGCT
TGTTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis