Browse Element(s) Details


Os.9751.1.S1_at

Description gb:AK069228.1
DB_XREF= gi:32979252
TID=Os.9751.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014N04, full insert sequence.
FL= gb:AK069228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4009011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40060NANA11+23381318..23387472retrotransposon protein, putative, unclassified
LOC_Os11g40070Os.10822.1.S1_at11/1111+23391080..23394815expressed protein
LOC_Os11g40080Os.26899.1.A1_at11/1111+23401288..23407870lipin, N-terminal conserved region family protein, expressed
LOC_Os11g40090Os.9751.1.S1_at11/1111+23408541..23411972expressed protein
LOC_Os11g40100Os.8848.1.S1_at11/1111+23412375..23415910SSXT protein containing protein, expressed
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9751.1.S1_at--390--8531Chr11:23411386..23411410 (25 bp)
TGGACCAGTGATCCCACAGTATGTA
LOC_Os11g40090
Os.9751.1.S1_at--1111--7951Chr11:23411444..23411468 (25 bp)
GGATCTAGCGCCTTGTCAACAGAGA
LOC_Os11g40090
Os.9751.1.S1_at--850--2471Chr11:23411469..23411493 (25 bp)
AACACGAGCTTCTGATCAACTACAT
LOC_Os11g40090
Os.9751.1.S1_at--130--8851Chr11:23411515..23411539 (25 bp)
TGATGACTTCAGATCCGACCCTAAG
LOC_Os11g40090
Os.9751.1.S1_at--31--7351Chr11:23411547..23411571 (25 bp)
GTGAAGACCTGAAAATGACCCGCCA
LOC_Os11g40090
Os.9751.1.S1_at--1151--7651Chr11:23411599..23411623 (25 bp)
GGGATGCAAATCTTCGTCGGCCGGT
LOC_Os11g40090
Os.9751.1.S1_at--189--8431Chr11:23411617..23411641 (25 bp)
GGCCGGTGCATTTAAATCCTCTGTA
LOC_Os11g40090
Os.9751.1.S1_at--952--2671Chr11:23411690..23411714 (25 bp)
AAGCGACGAAGGTTCTGATCATCTC
LOC_Os11g40090
Os.9751.1.S1_at--796--8891Chr11:23411778..23411802 (25 bp)
TGAGTTTATGCATGCTCAGCCCAGC
LOC_Os11g40090
Os.9751.1.S1_at--606--3611Chr11:23411857..23411881 (25 bp)
CTTGTCACCTGGAGTTGCTGTCACA
LOC_Os11g40090
Os.9751.1.S1_at--428--10371Chr11:23411927..23411951 (25 bp)
TTTTTTCTCATCTTGCCTACCAGAA
LOC_Os11g40090
Target Sequence 
TGGACCAGTGATCCCACAGTATGTATATCGTAAGATGGTGCTAATGTTTACGGAACCAGGATCTAGCGCCTTGTCAACAG
AGAAACACGAGCTTCTGATCAACTACATTCTCGTACTCACGCTCTACGCTGATGACTTCAGATCCGACCCTAAGGATATA
TGTGAAGACCTGAAAATGACCCGCCAGATGATTAAACCATATTATGACCAGCTGGGATGCAAATCTTCGTCGGCCGGTGC
ATTTAAATCCTCTGTAATGACACTTCCAGCTCCCCTCAAGTTCCCAAAAGAAGCTACAAGGAGAAAGCGACGAAGGTTCT
GATCATCTCAGAAGGATCTTTAGCCTTATCTGAATGTGGGTGTGATAGGAAAAGATTGTTCGAAGTTGGGCCTGAGTTTA
TGCATGCTCAGCCCAGCCTTCCGAATTACTGAAACATGTGGAATATGGCTTTTGCCTTGTTTTTGTTTCCCCTTGTCACC
TGGAGTTGCTGTCACAAAGGCAGAATATTGTTTATGTATTGATGACATTTTTTAACCCTTTTTTTTTCTCATCTTGCCTA
CCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis