Browse Element(s) Details


Os.8848.1.S1_at

Description gb:CB628447
DB_XREF= gi:29623436
DB_XREF=OSIIEb04A09.r
CLONE=OSIIEb04A09
TID=Os.8848.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8848 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_563619.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4010011/11SSXT protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40060NANA11+23381318..23387472retrotransposon protein, putative, unclassified
LOC_Os11g40070Os.10822.1.S1_at11/1111+23391080..23394815expressed protein
LOC_Os11g40080Os.26899.1.A1_at11/1111+23401288..23407870lipin, N-terminal conserved region family protein, expressed
LOC_Os11g40090Os.9751.1.S1_at11/1111+23408541..23411972expressed protein
LOC_Os11g40100Os.8848.1.S1_at11/1111+23412375..23415910SSXT protein containing protein, expressed
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008283biological_processcell proliferation
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0003713molecular_functiontranscription coactivator activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8848.1.S1_at--928--10651Chr11:23412943..23412967 (25 bp)
TTCCCCGGCCAGATGCTAATGAGAC
LOC_Os11g40100
Os.8848.1.S1_at--424--8891Chr11:23412924..23412948 (25 bp)
TGAGACCAGGTACTGTCAATGGCAT
LOC_Os11g40100
Os.8848.1.S1_at--870--8491Chr11:23412905..23412929 (25 bp)
TGGCATGCAATCTATCCCAGTTGCT
LOC_Os11g40100
Os.8848.1.S1_at--1119--2711Chr11:23412817..23412841 (25 bp)
AAGCAGGATGCAACCTCGGAGCCTT
LOC_Os11g40100
Os.8848.1.S1_at--812--10511Chr11:23412794..23412818 (25 bp)
TTCCGGGACCGAGAGCCACAAGAGT
LOC_Os11g40100
Os.8848.1.S1_at--338--4691Chr11:23412736..23412760 (25 bp)
GCGGAGAAGTCCTGAGCTAGCACAA
LOC_Os11g40100
Os.8848.1.S1_at--608--4191Chr11:23412659..23412683 (25 bp)
CCCTGCCTCGTGGATCACAAGTAGT
LOC_Os11g40100
Os.8848.1.S1_at--982--9691Chr11:23412645..23412669 (25 bp)
TCACAAGTAGTCCTTACTCATCACC
LOC_Os11g40100
Os.8848.1.S1_at--243--10011Chr11:23412610..23412634 (25 bp)
TAGAAGGCTCGTCTTATCGGTGTTG
LOC_Os11g40100
Os.8848.1.S1_at--711--6571Chr11:23412543..23412567 (25 bp)
GATTCTTATCTCATCCTACAATTGT
LOC_Os11g40100
Os.8848.1.S1_at--988--10411Chr11:23412407..23412431 (25 bp)
TTATATTCTTGTACTCCTTTTTTCT
LOC_Os11g40100
Target Sequence 
TTCCCCGGCCAGATGCTAATGAGACCAGGTACTGTCAATGGCATGCAATCTATCCCAGTTGCTGACCCTGCTCGCGCAGC
CGATNTTCAGACGNNAGCACCGGGCTCGGTAGATGNCCGAGGAAACAAGCAGGATGCAACCTCGGAGCCTTCCGGGACCG
AGAGCCACAAGAGTGCGGGAGCAGATAACGACGCAGGCGGTGACATAGCGGAGAAGTCCTGAGCTAGCACAAGTGTTAGG
ATGAATAATGCCATGTATACTAGCAATGAAAAAGAAAGAAAGCCCCCTGCCTCGTGGATCACAAGTAGTCCTTACTCATC
ACCCCCTGTGTTTTAGAAGGCTCGTCTTATCGGTGTTGTAGAACAAAACTTTTAGATTGATGATGATGTAACCTATCAGA
GATTCTTATCTCATCCTACAATTGTTGTAGCTATTATGGAATAATTTTACCAGCCTGAGANAGTTTTTACTTCTGTTTGC
CTGCTAATATAATGGTTAGTGTGATGAACTTAAAAAGGCGGTTGTATTTTGCAAGATTATATTCTTGTACTCCTTTTTTC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis