Browse Element(s) Details


Os.10822.1.S1_at

Description gb:AK072924.1
DB_XREF= gi:32982947
TID=Os.10822.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143D19, full insert sequence.
FL= gb:AK072924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4007011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40030OsAffx.19266.1.S1_s_at11/1111+23364736..23366261Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os11g40040NANA11+23372924..23373412transposon protein, putative, unclassified
LOC_Os11g40050NANA11+23377391..23380693retrotransposon protein, putative, unclassified
LOC_Os11g40060NANA11+23381318..23387472retrotransposon protein, putative, unclassified
LOC_Os11g40070Os.10822.1.S1_at11/1111+23391080..23394815expressed protein
LOC_Os11g40080Os.26899.1.A1_at11/1111+23401288..23407870lipin, N-terminal conserved region family protein, expressed
LOC_Os11g40090Os.9751.1.S1_at11/1111+23408541..23411972expressed protein
LOC_Os11g40100Os.8848.1.S1_at11/1111+23412375..23415910SSXT protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10822.1.S1_at--11--1531Chr11:23394246..23394270 (25 bp)
AGCATAGCGACATGTTGGCCTCCGA
LOC_Os11g40070
Os.10822.1.S1_at--617--8451Chr11:23394261..23394285 (25 bp)
TGGCCTCCGACGTGCATAAAGCTGG
LOC_Os11g40070
Os.10822.1.S1_at--986--6571Chr11:23394328..23394352 (25 bp)
GATTGACCATTTCTTGCTACCGAGT
LOC_Os11g40070
Os.10822.1.S1_at--735--4851Chr11:23394343..23394367 (25 bp)
GCTACCGAGTTCCATGGAGTATCAT
LOC_Os11g40070
Os.10822.1.S1_at--1091--6051Chr11:23394395..23394419 (25 bp)
GAGTTGTTCAACATGCCCAGTGTGG
LOC_Os11g40070
Os.10822.1.S1_at--39--6331Chr11:23394454..23394478 (25 bp)
GATGCTTTACGATGTATGCGTCCCC
LOC_Os11g40070
Os.10822.1.S1_at--212--6911Chr11:23394467..23394491 (25 bp)
GTATGCGTCCCCAAGAACGTAGAAG
LOC_Os11g40070
Os.10822.1.S1_at--629--5691Chr11:23394497..23394521 (25 bp)
GACTTCAAGCCTTCTGCATCAATAA
LOC_Os11g40070
Os.10822.1.S1_at--790--111Chr11:23394537..23394561 (25 bp)
ATTCTATTGCTCGTCAGCATGGCAC
LOC_Os11g40070
Os.10822.1.S1_at--644--1531Chr11:23394552..23394576 (25 bp)
AGCATGGCACTTTCAATCCGATAAA
LOC_Os11g40070
Os.10822.1.S1_at--1075--6751Chr11:23394606..23394630 (25 bp)
GTTCAACTGGAGTACCCTGATGCAT
LOC_Os11g40070
Target Sequence 
AGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGNCACCAGATGAT
CCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCCGAAACCGGAGTTGTTCAA
CATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACG
TAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTC
AATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis