Browse Element(s) Details


Os.26899.1.A1_at

Description gb:AK062893.1
DB_XREF= gi:32972911
TID=Os.26899.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E06, full insert sequence.
FL= gb:AK062893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4008011/11lipin, N-terminal conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40050NANA11+23377391..23380693retrotransposon protein, putative, unclassified
LOC_Os11g40060NANA11+23381318..23387472retrotransposon protein, putative, unclassified
LOC_Os11g40070Os.10822.1.S1_at11/1111+23391080..23394815expressed protein
LOC_Os11g40080Os.26899.1.A1_at11/1111+23401288..23407870lipin, N-terminal conserved region family protein, expressed
LOC_Os11g40090Os.9751.1.S1_at11/1111+23408541..23411972expressed protein
LOC_Os11g40100Os.8848.1.S1_at11/1111+23412375..23415910SSXT protein containing protein, expressed
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26899.1.A1_at--69--811Chr11:23407077..23407101 (25 bp)
ATGGGATGTTCCCTCCGATATCAAC
LOC_Os11g40080
Os.26899.1.A1_at--765--6491Chr11:23407093..23407115 (23 bp)
GATATCAACGTCATCTGAGCAGGAG
LOC_Os11g40080
Os.26899.1.A1_at--887--5511Chr11:23407267..23407291 (25 bp)
GAAAATGCCGTTACCTGCTGTTGAT
LOC_Os11g40080
Os.26899.1.A1_at--1077--8731Chr11:23407323..23407347 (25 bp)
TGTACAAGGTCTCTGGCACGCAGCA
LOC_Os11g40080
Os.26899.1.A1_at--690--2431Chr11:23407379..23407499 (25 bp)
AAAAGCACCCTGAGACCAATCGCTG
LOC_Os11g40080
Os.26899.1.A1_at--205--3191Chr11:23407491..23407515 (25 bp)
CAATCGCTGGTTGGTGTCATGTGGA
LOC_Os11g40080
Os.26899.1.A1_at--81--6351Chr11:23407514..23407538 (25 bp)
GATGCTCCTGACATAAATTCTTGCG
LOC_Os11g40080
Os.26899.1.A1_at--327--9571Chr11:23407532..23407556 (25 bp)
TCTTGCGAGGCTGACACTGTACATA
LOC_Os11g40080
Os.26899.1.A1_at--831--6631Chr11:23407647..23407671 (25 bp)
GTTGTTGTCCAACATGAGCTGCAAG
LOC_Os11g40080
Os.26899.1.A1_at--316--5171Chr11:23407667..23407691 (25 bp)
GCAAGCCTGCAACTGAATATGTGTA
LOC_Os11g40080
Os.26899.1.A1_at--91--491Chr11:23407725..23407749 (25 bp)
ATCTGTGTAGGATGTTGCCCTGCAA
LOC_Os11g40080
Target Sequence 
ATGGGATGTTCCCTCCGATATCAACGTCATCTGAGCAGGAGGACTACAATACTTGGAATTACTGGAAAATGCCGTTACCT
GCTGTTGATATTTGAGGTATNGCCGCAGTGCANGCTATGCTGTACAAGGTCTCTGGCACGCAGCAGCGGCCATGAGAAAT
GGCTTCCATGTTGAACAAAAGCACCCTGAGACCAATCGCTGGTTGGTGTCATGTGGATGCTCCTGACATAAATTCTTGCG
AGGCTGACACTGTACATAGGATCATAATAGAAAAACTTACAACCTGTATGACCAATGAGTCGGCAGAAGCAGTGTTAATT
AGTTCCTTGTTACTCAATTAGTCAATCTGTTGTTGTCCAACATGAGCTGCAAGCCTGCAACTGAATATGTGTAATATACT
GACTTGAGTGACTGAATGGAGGGGAAATCTGTGTAGGATGTTGCCCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26899.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis