Browse Element(s) Details


OsAffx.19268.1.S1_at

Description tigr:9639.m03668
TID=OsAffx.19268.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4012011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40080Os.26899.1.A1_at11/1111+23401288..23407870lipin, N-terminal conserved region family protein, expressed
LOC_Os11g40090Os.9751.1.S1_at11/1111+23408541..23411972expressed protein
LOC_Os11g40100Os.8848.1.S1_at11/1111+23412375..23415910SSXT protein containing protein, expressed
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed
LOC_Os11g40150Os.57536.1.S1_at11/1111+23441360..23445273DNA repair protein RAD51 homolog A, putative, expressed
LOC_Os11g40160Os.51651.1.A1_at11/1111+23445716..23447986expressed protein
LOC_Os11g40170OsAffx.7363.1.S1_at11/1111+23451404..23451835hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19268.1.S1_at--288--2111Chr11:23430251..23430275 (25 bp)
ACAGGCGGGCTTACCTCAAGCGTTG
LOC_Os11g40120
OsAffx.19268.1.S1_at--406--5971Chr11:23430186..23430210 (25 bp)
GAGAAGATCGCGTTGATGCCCTGCA
LOC_Os11g40120
OsAffx.19268.1.S1_at--410--4531Chr11:23430159..23430183 (25 bp)
GCCGCCCATTGCGTGGAGCAGTTCG
LOC_Os11g40120
OsAffx.19268.1.S1_at--1087--6691Chr11:23430139..23430163 (25 bp)
GTTCGCCGCCGACAAAGCTATGGCG
LOC_Os11g40120
OsAffx.19268.1.S1_at--48--9151Chr11:23429894..23429918 (25 bp)
TGCGGGAGATGGACAGGTACAACAA
LOC_Os11g40120
OsAffx.19268.1.S1_at--655--3251Chr11:23429785..23429809 (25 bp)
CAACCTGGAGATGAGAGTCGCCGTC
LOC_Os11g40120
OsAffx.19268.1.S1_at--1112--1331Chr11:23429772..23429796 (25 bp)
AGAGTCGCCGTCTCCAAAGCTGAGG
LOC_Os11g40120
OsAffx.19268.1.S1_at--65--4511Chr11:23429766..23429790 (25 bp)
GCCGTCTCCAAAGCTGAGGGTATCT
LOC_Os11g40120
OsAffx.19268.1.S1_at--187--8891Chr11:23429752..23429776 (25 bp)
TGAGGGTATCTTTCTGGATGACGCC
LOC_Os11g40120
OsAffx.19268.1.S1_at--246--8571Chr11:23429738..23429762 (25 bp)
TGGATGACGCCGAGATGACCGATCT
LOC_Os11g40120
OsAffx.19268.1.S1_at--205--5811Chr11:23429733..23429757 (25 bp)
GACGCCGAGATGACCGATCTAATTA
LOC_Os11g40120
Target Sequence 
ACAGGCGGGCTTACCTCAAGCGTTGCGTCGTCGCGCTGGCGGCGGCGGCGGCGGAGGATGCCGGCGAGAAGATCGCGTTG
ATGCCCTGCACCGCCGCCCATTGCGTGGAGCAGTTCGCCGCCGACAAAGCTATGGCGGCGAGAGGCTCAAAGCGAAGCGG
CGGTACGCTGGTGCCGGTCGACGGCGAGGAGGCGATCCTGGTCCCGCGCGGGAAGCTCGCGCTGTCGAAGAAGCTGGTCG
ACAAGATCCTCTCCCTGGAGCGGAGGGAGCTGCCCCACGTCGCCGACCTCCTCAAGGACGGCGGCGGCGGCGGCGACCCG
AACCCGTCGGAGGCGGAGAAGTTGCTCAGGAAGAGCGTGCGGGAGATGGACAGGTACAACAAGAAGCGCGAGGACAAGCT
CGCGGAGTGCCAGGCGATCATACGGCGCGTCCGCCATGGCAAGGGCGGCTACGCCGTCGTCGACAACAACCTGGAGATGA
GAGTCGCCGTCTCCAAAGCTGAGGGTATCTTTCTGGATGACGCCGAGATGACCGATCTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis