Browse Element(s) Details


Os.51651.1.A1_at

Description gb:AK063272.1
DB_XREF= gi:32973290
TID=Os.51651.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B12, full insert sequence.
FL= gb:AK063272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4016011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed
LOC_Os11g40150Os.57536.1.S1_at11/1111+23441360..23445273DNA repair protein RAD51 homolog A, putative, expressed
LOC_Os11g40160Os.51651.1.A1_at11/1111+23445716..23447986expressed protein
LOC_Os11g40170OsAffx.7363.1.S1_at11/1111+23451404..23451835hypothetical protein
LOC_Os11g40180OsAffx.7364.1.S1_at10/1111+23463554..23467573dirigent, putative
LOC_Os11g40180Os.53709.1.S1_at1/1111+23463554..23467573dirigent, putative
LOC_Os11g40189NANA11+23469954..23470244NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51651.1.A1_at--789--7451Chr11:23447413..23447437 (25 bp)
GTGTCTGATAATTCTTTCAATGCAG
LOC_Os11g40160
Os.51651.1.A1_at--916--2411Chr11:23447448..23447472 (25 bp)
AAAAAACATCTTGGAGGCACTTACA
LOC_Os11g40160
Os.51651.1.A1_at--131--5431Chr11:23447478..23447502 (25 bp)
GAAGCCTAATGCTAATACTTTGGAA
LOC_Os11g40160
Os.51651.1.A1_at--387--8191Chr11:23447499..23447523 (25 bp)
GGAAGCATTGCAACACATTCTCAAA
LOC_Os11g40160
Os.51651.1.A1_at--377--2731Chr11:23447539..23447563 (25 bp)
AAGAAGTTTTTGCTCATATTGGATG
LOC_Os11g40160
Os.51651.1.A1_at--229--3151Chr11:23447600..23447624 (25 bp)
AATTAATGGCTCCTTTCCAGAACAG
LOC_Os11g40160
Os.51651.1.A1_at--535--2831Chr11:23447637..23447661 (25 bp)
AAGTAGAATCCTGTTGACAACTCGA
LOC_Os11g40160
Os.51651.1.A1_at--1126--5611Chr11:23447652..23447676 (25 bp)
GACAACTCGAATGACATCTGTAGCA
LOC_Os11g40160
Os.51651.1.A1_at--712--451Chr11:23447879..23447903 (25 bp)
ATCTCAGGAGCAATGTAAGTCATCA
LOC_Os11g40160
Os.51651.1.A1_at--975--2411Chr11:23447946..23447970 (25 bp)
AAAAACGAGTGCCATTATCACACCA
LOC_Os11g40160
Os.51651.1.A1_at--749--10171Chr11:23447961..23447985 (25 bp)
TATCACACCAGTTCTTCAGTTGCGT
LOC_Os11g40160
Target Sequence 
GTGTCTGATAATTCTTTCAATGCAGCAAGGATAACAAAAAACATCTTGGAGGCACTTACAAANCAGAAGCCTAATGCTAA
TACTTTGGAAGCATTGCAACACATTCTCAAAGAGAATCTCNAATCAAAGAAGTTTTTGCTCATATTGGATGATGTTTGGG
AAGACAGCAATTGGGGTGAATGGCAAAAATTAATGGCTCCTTTCCAGAACAGNCCCCATAACGGAAGTAGAATCCTGTTG
ACAACTCGAATGACATCTGTAGCAGATATGGTTACAAGTGTGATGCGAAGTAATAATGATTATATGAACCTAAATGGATT
AGACGAATATCACAATTTTATGATGTTCAAGAAGTATGCCTTTTATGGTATGAAAACTGAAGATTATGAACATCTCCTGC
CACTTGCTGAAAACATAGCAAAGAAGTTTCAAGGGTGTCCCTTGGTGACAAAGATTGCAAGCGAGCATCTCAGGAGCAAT
GTAAGTCATCATCATTGGAATAATTTATACAGGCAGTTGGAAAACTTAGAAGGAAAAACGAGTGCCATTATCACACCAGT
TCTTCAGTTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51651.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis