Browse Element(s) Details


OsAffx.7364.1.S1_at

Description tigr:9639.m03673
TID=OsAffx.7364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4018010/11dirigent, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed
LOC_Os11g40150Os.57536.1.S1_at11/1111+23441360..23445273DNA repair protein RAD51 homolog A, putative, expressed
LOC_Os11g40160Os.51651.1.A1_at11/1111+23445716..23447986expressed protein
LOC_Os11g40170OsAffx.7363.1.S1_at11/1111+23451404..23451835hypothetical protein
LOC_Os11g40180OsAffx.7364.1.S1_at10/1111+23463554..23467573dirigent, putative
LOC_Os11g40180Os.53709.1.S1_at1/1111+23463554..23467573dirigent, putative
LOC_Os11g40189NANA11+23469954..23470244NA
LOC_Os11g40200Os.50809.1.S1_at11/1111+23475465..23478531expressed protein
LOC_Os11g40210Os.5804.1.S1_at11/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40210Os.10878.1.S1_at1/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40220OsAffx.19269.1.S1_at11/1111+23491967..23493016BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7364.1.S1_at--1080--1931NONE
ACGGCTCAGAGTTCGTGGGATCCAC
NONE
OsAffx.7364.1.S1_at--1158--7971Chr11:23464433..23464457 (25 bp)
GGATCCACGCTTTTAGTTGCTGGGA
LOC_Os11g40180
OsAffx.7364.1.S1_at--973--10691Chr11:23464449..23464473 (25 bp)
TTGCTGGGACTTACACAACTGGTCA
LOC_Os11g40180
OsAffx.7364.1.S1_at--104--6591Chr11:23464578..23464602 (25 bp)
GATTGCTTCAAATCCGCGCCAAGTA
LOC_Os11g40180
OsAffx.7364.1.S1_at--341--10751Chr11:23466920..23466944 (25 bp)
TTGAGAGAGAACCTTCTGCCTTGGT
LOC_Os11g40180
OsAffx.7364.1.S1_at--811--3811Chr11:23466935..23466959 (25 bp)
CTGCCTTGGTTAACTTCATCGACTA
LOC_Os11g40180
OsAffx.7364.1.S1_at--147--3271Chr11:23466996..23467020 (25 bp)
CAACAGGCATCTTCTTGGAACAGGT
LOC_Os11g40180
OsAffx.7364.1.S1_at--413--9851Chr11:23467036..23467060 (25 bp)
TACAAGGCAGTCATTCGTGGCGCAA
LOC_Os11g40180
OsAffx.7364.1.S1_at--564--5131Chr11:23467057..23467081 (25 bp)
GCAACAGTTGCCGTGAAGATTACCA
LOC_Os11g40180
OsAffx.7364.1.S1_at--260--4671Chr11:23467104..23467498 (25 bp)
GCGGGCGTTCGCTCAAGAGTTTATC
LOC_Os11g40180
OsAffx.7364.1.S1_at--351--7131Chr11:23467516..23467540 (25 bp)
GTCTCCTTTCAAGCCTATCTTAGGT
LOC_Os11g40180
Target Sequence 
ACGGCTCAGAGTTCGTGGGATCCACGCTTTTAGTTGCTGGGACTTACACAACTGGTCAGAAAGGTGAGTGGGCTATCGTT
GGCGGCACAGGAAAATTTTCGCTTGCACAAGGTGTAATACACAAGGAAATGGTGAGGACTAATCCAGGCACTGGGGAGGT
CAGATTGCTTCAAATCCGCGCCAAGTACAGCACTGTGGAATCATGTTGTGAACAGAATGCTGAAGACAAACAAAAGAACC
ATGACATAAGGTTGAAAACATTGTTGGAACAGTTTGCAAGATATCGTGAGTGGATTGAGAGAGAACCTTCTGCCTTGGTT
AACTTCATCGACTACAAGGCTTCAGAGGTAGATGCTGCAATCAACGATACCAACAGGCATCTTCTTGGAACAGGTGGATT
TGGTACTGTGTACAAGGCAGTCATTCGTGGCGCAACAGTTGCCGTGAAGATTACCAACGAGATAAGCCACCGAGGAGTGC
GGGCGTTCGCTCAAGAGTTTATCTCTAGAGCGAACGCGGTGTCTCCTTTCAAGCCTATCTTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis