Browse Element(s) Details


Os.5804.1.S1_at

Description gb:AK103590.1
DB_XREF= gi:32988799
TID=Os.5804.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133C18, full insert sequence.
FL= gb:AK103590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4021011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40180OsAffx.7364.1.S1_at10/1111+23463554..23467573dirigent, putative
LOC_Os11g40180Os.53709.1.S1_at1/1111+23463554..23467573dirigent, putative
LOC_Os11g40189NANA11+23469954..23470244NA
LOC_Os11g40200Os.50809.1.S1_at11/1111+23475465..23478531expressed protein
LOC_Os11g40210Os.5804.1.S1_at11/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40210Os.10878.1.S1_at1/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40220OsAffx.19269.1.S1_at11/1111+23491967..23493016BTB/POZ domain containing protein, expressed
LOC_Os11g40230OsAffx.19270.1.S1_at11/1111+23496648..23498033expressed protein
LOC_Os11g40230OsAffx.23984.1.S1_x_at2/1111+23496648..23498033expressed protein
LOC_Os11g40240OsAffx.19271.1.S1_at11/1111+23501620..23502342Protein kinase domain containing protein, expressed
LOC_Os11g40250NANA11+23502546..23503323expressed protein
LOC_Os11g40260NANA11+23506166..23508339expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5804.1.S1_at--787--6311Chr11:23483929..23483953 (25 bp)
GATGACAGGGCCAAGAGCTGCATAA
LOC_Os11g40210
Os.5804.1.S1_at--376--9711Chr11:23483785..23483809 (25 bp)
TCAAGCTTGGATCAACCTGGAGAGT
LOC_Os11g40210
Os.5804.1.S1_at--119--6451Chr11:23483776..23483800 (25 bp)
GATCAACCTGGAGAGTGCCAAGGCT
LOC_Os11g40210
Os.5804.1.S1_at--613--4391Chr11:23483760..23483784 (25 bp)
GCCAAGGCTGAAGCACAGTCCAGAA
LOC_Os11g40210
Os.5804.1.S1_at--827--2451Chr11:23482202..23482226 (25 bp)
AACAACATCATCAGTGGCAACCTCC
LOC_Os11g40210
Os.5804.1.S1_at--1096--8211Chr11:23482187..23482211 (25 bp)
GGCAACCTCCTGAACTACTATTAGA
LOC_Os11g40210
Os.5804.1.S1_at--1118--10031Chr11:23482166..23482190 (25 bp)
TAGATATGATCAGCTAGCCGCCATG
LOC_Os11g40210
Os.5804.1.S1_at--235--10751Chr11:23482118..23482142 (25 bp)
TTGTTCGGGAGATCAACGGGTTCTT
LOC_Os11g40210
Os.5804.1.S1_at--738--1911Chr11:23482103..23482127 (25 bp)
ACGGGTTCTTGTTGATTGTAGTGGA
LOC_Os11g40210
Os.5804.1.S1_at--662--7451Chr11:23482039..23482063 (25 bp)
GTGTCATGTGTATCAAAAAACTCTG
LOC_Os11g40210
Os.5804.1.S1_at--250--2431Chr11:23482023..23482047 (25 bp)
AAAACTCTGATTTTTCAAGGTGATA
LOC_Os11g40210
Target Sequence 
GATGACAGGGCCAAGAGCTGCATAAGGTATCAGAGGGAAGAGGCAAAGATTCAAGCTTGGATCAACCTGGAGAGTGCCAA
GGCTGAAGCACAGTCCAGAAAGCTAGAGGTGAAGATTCAGAAGATGAGATCAAACCTGGAGGAGAAGCTGATGAGGAGGA
TGNCGNCCGTGCACCGGCGCGCCNAGGAGTGGAGAGCGACGGCGCAGGCGCAGCACCTCCAGCAGCTGAAGCGCGCCGCC
GAGCAAGTCCGGCGGGCCAAGGCCACCAGCCACCATCACCACCACCACCACCTCGCCGGCAGCAACGCCTCCTGCGGCTG
CTTCCCCTGCAATGGCAGCAACAACATCATCAGTGGCAACCTCCTGAACTACTATTAGATATGATCAGCTAGCCGCCATG
GAAGAAGGATCAAGAATGCCAATTTGTTCGGGAGATCAACGGGTTCTTGTTGATTGTAGTGGATGTTTGGGACGTGTGAA
GATGGAGATGTGGGAGATAATGGTGTCATGTGTATCAAAAAACTCTGATTTTTCAAGGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis