Browse Element(s) Details


OsAffx.19269.1.S1_at

Description tigr:9639.m03679
TID=OsAffx.19269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4022011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40180OsAffx.7364.1.S1_at10/1111+23463554..23467573dirigent, putative
LOC_Os11g40180Os.53709.1.S1_at1/1111+23463554..23467573dirigent, putative
LOC_Os11g40189NANA11+23469954..23470244NA
LOC_Os11g40200Os.50809.1.S1_at11/1111+23475465..23478531expressed protein
LOC_Os11g40210Os.5804.1.S1_at11/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40210Os.10878.1.S1_at1/1111+23481992..23485695Remorin, C-terminal region family protein, expressed
LOC_Os11g40220OsAffx.19269.1.S1_at11/1111+23491967..23493016BTB/POZ domain containing protein, expressed
LOC_Os11g40230OsAffx.19270.1.S1_at11/1111+23496648..23498033expressed protein
LOC_Os11g40230OsAffx.23984.1.S1_x_at2/1111+23496648..23498033expressed protein
LOC_Os11g40240OsAffx.19271.1.S1_at11/1111+23501620..23502342Protein kinase domain containing protein, expressed
LOC_Os11g40250NANA11+23502546..23503323expressed protein
LOC_Os11g40260NANA11+23506166..23508339expressed protein
LOC_Os11g40270OsAffx.7367.1.S1_at11/1111+23511830..23512264hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19269.1.S1_at--630--6271Chr11:23492506..23492530 (25 bp)
GATGTCACCGTCGTGAAGCGCGACG
LOC_Os11g40220
OsAffx.19269.1.S1_at--74--8551Chr11:23492451..23492475 (25 bp)
TGGAGCACGACATGTTCAGATGCCT
LOC_Os11g40220
OsAffx.19269.1.S1_at--1130--1611Chr11:23492331..23492355 (25 bp)
AGCTGGCCAAGCTCTGTCGTCGTCG
LOC_Os11g40220
OsAffx.19269.1.S1_at--264--9631Chr11:23492289..23492313 (25 bp)
TCATGGGACTCGTCGGGAGGCACAT
LOC_Os11g40220
OsAffx.19269.1.S1_at--987--8091Chr11:23492249..23492273 (25 bp)
GGACGCCGCTGCGTTCAAGGCTCTG
LOC_Os11g40220
OsAffx.19269.1.S1_at--141--9351Chr11:23492148..23492172 (25 bp)
TCGCGGCAGCGCGTAAATACGGCTT
LOC_Os11g40220
OsAffx.19269.1.S1_at--81--4031Chr11:23492137..23492161 (25 bp)
CGTAAATACGGCTTGGACTGGGAGA
LOC_Os11g40220
OsAffx.19269.1.S1_at--743--7911Chr11:23492112..23492136 (25 bp)
GGTTGAGGCTCCTCTGTGAGGACAA
LOC_Os11g40220
OsAffx.19269.1.S1_at--1044--4131Chr11:23492074..23492098 (25 bp)
CGCGTCGACGACACGAGCATGGACA
LOC_Os11g40220
OsAffx.19269.1.S1_at--661--4831Chr11:23492029..23492053 (25 bp)
GCTACCGGCGATGATCCGAAGCGTA
LOC_Os11g40220
OsAffx.19269.1.S1_at--936--8851Chr11:23492018..23492042 (25 bp)
TGATCCGAAGCGTAGCCAGCGACGT
LOC_Os11g40220
Target Sequence 
GATGTCACCGTCGTGAAGCGCGACGGGCCTCCGACGATGTCGACCCTCTGCCCGGTGGAGCACGACATGTTCAGATGCCT
GCTCGACACCGGGGACGACGCGGACGTCGCGTTCAGGGCCGCCGGCGGCGAGACGATCGCCGCGCATAGGCGGGTGCTCG
AGCGACGGGCACCGGAGCTGGCCAAGCTCTGTCGTCGTCGCGGCGGCGCCTCCTGCTTCATGGGACTCGTCGGGAGGCAC
ATCGACGTCGGCGACATGGACGCCGCTGCGTTCAAGGCTCTGCTTCACTTCGTGTACACCGACACGCTGCCGGAGACGAT
GGCCCCGCGAGAGGTGCCGGCCATGGCGCCGCAGCTGATCGCGGCAGCGCGTAAATACGGCTTGGACTGGGAGAGGTTGA
GGCTCCTCTGTGAGGACAAGGCGTGGGGATGGCGCGTCGACGACACGAGCATGGACACGACGGCGGCGGCTGCTCCGGCT
ACCGGCGATGATCCGAAGCGTAGCCAGCGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis