Browse Element(s) Details


Os.56524.1.S1_at

Description gb:AK110112.1
DB_XREF= gi:32995321
TID=Os.56524.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-161-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-161-A09, full insert sequence.
FL= gb:AK110112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4028411/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40230OsAffx.19270.1.S1_at11/1111+23496648..23498033expressed protein
LOC_Os11g40230OsAffx.23984.1.S1_x_at2/1111+23496648..23498033expressed protein
LOC_Os11g40240OsAffx.19271.1.S1_at11/1111+23501620..23502342Protein kinase domain containing protein, expressed
LOC_Os11g40250NANA11+23502546..23503323expressed protein
LOC_Os11g40260NANA11+23506166..23508339expressed protein
LOC_Os11g40270OsAffx.7367.1.S1_at11/1111+23511830..23512264hypothetical protein
LOC_Os11g40284Os.56524.1.S1_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.56524.1.S1_x_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.45212.1.S1_x_at1/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40300NANA11+23526672..23529000hypothetical protein
LOC_Os11g40310NANA11+23530157..23530441hypothetical protein
LOC_Os11g40320OsAffx.19272.1.S1_s_at11/1111+23536078..23538270expressed protein
LOC_Os11g40320OsAffx.19272.1.S1_at11/1111+23536078..23538270expressed protein
LOC_Os11g40330OsAffx.31401.1.S1_at10/1111+23539438..23541288hypothetical protein
LOC_Os11g40340OsAffx.19273.1.S1_at11/1111+23545075..23548802expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56524.1.S1_at--1101--1491Chr11:23525063..23525087 (25 bp)
AGCACTCGAGCACATACGCAAGTAC
LOC_Os11g40284
Os.56524.1.S1_at--943--1971Chr11:23525066..23525090 (25 bp)
ACTCGAGCACATACGCAAGTACGCC
LOC_Os11g40284
Os.56524.1.S1_at--740--9271Chr11:23525289..23525313 (25 bp)
TCCTGGAACACTGTCTCTTTCAAGC
LOC_Os11g40284
Os.56524.1.S1_at--612--3911Chr11:23525291..23525315 (25 bp)
CTGGAACACTGTCTCTTTCAAGCAT
LOC_Os11g40284
Os.56524.1.S1_at--1098--8511Chr11:23525292..23525316 (25 bp)
TGGAACACTGTCTCTTTCAAGCATT
LOC_Os11g40284
Os.56524.1.S1_at--1130--8151Chr11:23525293..23525317 (25 bp)
GGAACACTGTCTCTTTCAAGCATTT
LOC_Os11g40284
Os.56524.1.S1_at--731--2471Chr11:23525295..23525319 (25 bp)
AACACTGTCTCTTTCAAGCATTTCT
LOC_Os11g40284
Os.56524.1.S1_at--805--3331Chr11:23525297..23525321 (25 bp)
CACTGTCTCTTTCAAGCATTTCTAT
LOC_Os11g40284
Os.56524.1.S1_at--404--2991Chr11:23525360..23525384 (25 bp)
AATGTATATATCATTATGTAAGCCC
LOC_Os11g40284
Os.56524.1.S1_at--1092--1651Chr11:23525380..23525404 (25 bp)
AGCCCTTCAGCACAATGTAAGCCCT
LOC_Os11g40284
Os.56524.1.S1_at--173--3651Chr11:23525384..23525408 (25 bp)
CTTCAGCACAATGTAAGCCCTTCGG
LOC_Os11g40284
Target Sequence 
AGCACTCGAGCACATACGCAAGTACGCCACAGGCACTTCGGCAACTTACAACAAAAAAGTTCGACCGATGGAGCTGTTGC
CTGGTCATCTTGTCCTAAGGAAGAAGGCGAACCCGGTAGCCGTTGGCAAGCTTGAATCGAAGTGGGAAGGACCGTACCTC
ATCAAGCACAAGTCCCGGATGGGGTCCTTTCGACTGGCGACACTGGAAGGCGAAGAGTTCGACCATTCCTGGAACACTGT
CTCTTTCAAGCATTTCTATGTCTAGAACGGGTGGCACCCAAATCGCCAACTTGTAAAAATGTATATATCATTATGTAAGC
CCTTCAGCACAATGTAAGCCCTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis