Browse Element(s) Details


Os.37941.1.S1_at

Description gb:AK101900.1
DB_XREF= gi:32987109
TID=Os.37941.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071B22, full insert sequence.
FL= gb:AK101900.1 gb:AK058559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2546011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25400NANA9+15229072..15229649hypothetical protein
LOC_Os09g25410Os.15800.1.S1_x_at11/119+15232454..15234332expressed protein
LOC_Os09g25420OsAffx.30015.1.S1_at11/119+15234571..15236823Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25430Os.9450.1.S1_at11/119+15239462..15241481Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25440OsAffx.17889.1.S1_at10/119+15244152..15246476Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25450OsAffx.30016.1.S1_at11/119+15248651..15249123hypothetical protein
LOC_Os09g25460Os.37941.1.S1_at11/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25460OsAffx.23984.1.S1_x_at1/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25470OsAffx.30017.1.S1_at11/119+15267402..15268049hypothetical protein
LOC_Os09g25480OsAffx.10645.1.S1_at3/119+15268383..15269689hypothetical protein
LOC_Os09g25480OsAffx.10645.2.S1_x_at2/119+15268383..15269689hypothetical protein
LOC_Os09g25490Os.10206.1.S1_at11/119+15280319..15284892Cellulose synthase A catalytic subunit 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37941.1.S1_at--395--5431Chr09:15251343..15251367 (25 bp)
GAACCGGAGTACATCCAGTGCTTTG
LOC_Os09g25460
Os.37941.1.S1_at--829--5291Chr09:15251317..15251341 (25 bp)
GAAGGCCTTCTACGGCACAGAGTGA
LOC_Os09g25460
Os.37941.1.S1_at--499--8131Chr09:15251249..15251273 (25 bp)
GGACATCGAGCGACCTGGGATGCAT
LOC_Os09g25460
Os.37941.1.S1_at--1065--7451Chr09:15251209..15251233 (25 bp)
GTGTCGACGTCTGCTGACTCTGTGT
LOC_Os09g25460
Os.37941.1.S1_at--744--5711Chr09:15251194..15251218 (25 bp)
GACTCTGTGTCATGCTCAATACATA
LOC_Os09g25460
Os.37941.1.S1_at--768--10071Chr09:15251132..15251156 (25 bp)
TAGTGTATGCTGGTACTGTGCAACA
LOC_Os09g25460
Os.37941.1.S1_at--835--9011Chr09:15251106..15251130 (25 bp)
TGCAAGTGTAATGAGCTGCTGCCTT
LOC_Os09g25460
Os.37941.1.S1_at--228--4451Chr09:15251086..15251110 (25 bp)
GCCTTGTTGGTTGCAGCTCTCTCTA
LOC_Os09g25460
Os.37941.1.S1_at--283--1591Chr09:15251072..15251096 (25 bp)
AGCTCTCTCTACACAGACACTTTGG
LOC_Os09g25460
Os.37941.1.S1_at--22--5611Chr09:15251057..15251081 (25 bp)
GACACTTTGGTCTGTCTTAAGTTCG
LOC_Os09g25460
Os.37941.1.S1_at--1113--6671Chr09:15250978..15251002 (25 bp)
GTTCGCAAGCAAACGGTTGGTTATT
LOC_Os09g25460
Target Sequence 
GAACCGGAGTACATCCAGTGCTTTGAGAAGGCCTTCTACGGCACAGAGTGATATGATGCGGCGGCGGCGGCGGTGGCCGG
AGTTTAGAGCTGGAGGACATCGAGCGACCTGGGATGCATGATGACGCCGAGGTGGTGTCGACGTCTGCTGACTCTGTGTC
ATGCTCAATACATAACATAATATGCGTTATTTGATTTGCGGTAGAAGTATTTAGTGTATGCTGGTACTGTGCAACAGTGC
AAGTGTAATGAGCTGCTGCCTTGTTGGTTGCAGCTCTCTCTACACAGACACTTTGGTCTGTCTTAAGTTCGTATGTACAA
AAAAAAAATCAAATGGAAATGAAAATGACTATGGAAGCAAAGAAAGTTCGCAAGCAAACGGTTGGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis