Browse Element(s) Details


Os.10206.1.S1_at

Description gb:AK121170.1
DB_XREF= gi:37990793
TID=Os.10206.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081B08, full insert sequence.
FL= gb:AK121170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2549011/11Cellulose synthase A catalytic subunit 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25460Os.37941.1.S1_at11/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25460OsAffx.23984.1.S1_x_at1/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25470OsAffx.30017.1.S1_at11/119+15267402..15268049hypothetical protein
LOC_Os09g25480OsAffx.10645.1.S1_at3/119+15268383..15269689hypothetical protein
LOC_Os09g25480OsAffx.10645.2.S1_x_at2/119+15268383..15269689hypothetical protein
LOC_Os09g25490Os.10206.1.S1_at11/119+15280319..15284892Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os09g25500Os.17086.1.S1_at11/119+15285308..15291579expressed protein
LOC_Os09g25510OsAffx.30941.1.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.9.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.5.S1_x_at8/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.2.S1_x_at5/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25520OsAffx.29755.1.S1_s_at11/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_x_at10/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_at8/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.4.S1_x_at5/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.5.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.2.S1_x_at4/119+15303466..15310899hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0009414biological_processresponse to water deprivation
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10206.1.S1_at--230--3611Chr09:15284404..15284428 (25 bp)
CATTGTTGTCATCTGGTCCGTGCTG
LOC_Os09g25490
Os.10206.1.S1_at--568--431Chr09:15284438..15284462 (25 bp)
ATCTTTTCCTTGCTCTGGGTCAGGA
LOC_Os09g25490
Os.10206.1.S1_at--838--8611Chr09:15284453..15284477 (25 bp)
TGGGTCAGGATTGATCCCTTCACCA
LOC_Os09g25490
Os.10206.1.S1_at--909--8931Chr09:15284494..15284518 (25 bp)
TGACGTCAGGCAGTGCGGCATCAAC
LOC_Os09g25490
Os.10206.1.S1_at--250--6131Chr09:15284527..15284551 (25 bp)
GAGGGCGTCAGCGATTTCTGAAGAT
LOC_Os09g25490
Os.10206.1.S1_at--541--2831Chr09:15284589..15284613 (25 bp)
AAGTTTTGTATTGCTCGTGTTGAGT
LOC_Os09g25490
Os.10206.1.S1_at--1068--8891Chr09:15284609..15284633 (25 bp)
TGAGTTCGTGCTATGTTCTTCTGTA
LOC_Os09g25490
Os.10206.1.S1_at--624--1991Chr09:15284726..15284750 (25 bp)
ACTCCATGTTTGTTAGATTTTTTGC
LOC_Os09g25490
Os.10206.1.S1_at--54--6551Chr09:15284741..15284765 (25 bp)
GATTTTTTGCAGCTGTGTTCTCATT
LOC_Os09g25490
Os.10206.1.S1_at--206--6731Chr09:15284757..15284781 (25 bp)
GTTCTCATTGCTCCTACTAGGGATA
LOC_Os09g25490
Os.10206.1.S1_at--966--5251Chr09:15284833..15284857 (25 bp)
GAATCGATTTGGTCAAGGGCTGAAG
LOC_Os09g25490
Target Sequence 
CATTGTTGTCATCTGGTCCGTGCTGCTCGCCTCCATCTTTTCCTTGCTCTGGGTCAGGATTGATCCCTTCACCATCAAGG
CCAGGGGCCCTGACGTCAGGCAGTGCGGCATCAACTGCTNGAGAGAGGGCGTCAGCGATTTCTGAAGATTTGTGCATAGG
GGGGCAGCAAGAAGATCGATTTGTAAAAGTTTTGTATTGCTCGTGTTGAGTTCGTGCTATGTTCTTCTGTAATATTTTGG
GACCCAGAAATGGTTTAAACTTTTGAAGAGGGAATGGACAGATGNCCATATTTGAATGTTAAGCAACAAGGGNTGGTATT
NTCACTCCATGTTTGTTAGATTTTTTGCAGCTGTGTTCTCATTGCTCCTACTAGGGATATATGGGTAATTTGGACCAAAC
CATGGGCATTAATGTAGCTTAAAAGTATATGAATCGATTTGGTCAAGGGCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis