Browse Element(s) Details


OsAffx.17892.1.S1_at

Description tigr:9637.m02208
TID=OsAffx.17892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor-like protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2554011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25510OsAffx.30941.1.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.9.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.5.S1_x_at8/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.2.S1_x_at5/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25520OsAffx.29755.1.S1_s_at11/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_x_at10/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_at8/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.4.S1_x_at5/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.5.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.2.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25530OsAffx.17891.1.S1_at11/119+15314583..15314906hypothetical protein
LOC_Os09g25540OsAffx.17892.1.S1_at11/119+15319528..15322850Leucine Rich Repeat family protein
LOC_Os09g25550Os.16309.1.S1_at11/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25550Os.23249.1.A1_at1/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed
LOC_Os09g25570Os.47386.1.S1_at10/119+15343636..15346098Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17892.1.S1_at--464--4791Chr09:15322328..15322351 (24 bp)
GCTCCATCGGATACATTCCTCCAGA
LOC_Os09g25540
OsAffx.17892.1.S1_at--1009--10651Chr09:15322343..15322447 (25 bp)
TTCCTCCAGAGTACGGGTATGGCTC
LOC_Os09g25540
OsAffx.17892.1.S1_at--386--9931Chr09:15322434..15322458 (25 bp)
TACGGGTATGGCTCGAACCCGACGA
LOC_Os09g25540
OsAffx.17892.1.S1_at--388--2751Chr09:15322512..15322536 (25 bp)
AAGAAACCGATCGACGACATGTTCG
LOC_Os09g25540
OsAffx.17892.1.S1_at--541--8611Chr09:15322560..15322584 (25 bp)
TGGGTGAAGAACCACTACCACGGCC
LOC_Os09g25540
OsAffx.17892.1.S1_at--447--9371Chr09:15322600..15322624 (25 bp)
TCGACCCGGCTCTGGCGCGCATGGT
LOC_Os09g25540
OsAffx.17892.1.S1_at--403--9631Chr09:15322645..15322669 (25 bp)
TCAGGAGGATGTCCGACGTGGCCAT
LOC_Os09g25540
OsAffx.17892.1.S1_at--351--1591Chr09:15322684..15322708 (25 bp)
AGCTCGGCATCCTCTGCACGCAGGA
LOC_Os09g25540
OsAffx.17892.1.S1_at--633--8531Chr09:15322753..15322777 (25 bp)
TGGACCGGCTCAAGCGGTACATCGG
LOC_Os09g25540
OsAffx.17892.1.S1_at--718--9711Chr09:15322762..15322786 (25 bp)
TCAAGCGGTACATCGGCGGTGAGAC
LOC_Os09g25540
OsAffx.17892.1.S1_at--802--491Chr09:15322773..15322797 (25 bp)
ATCGGCGGTGAGACCACGGCCACGT
LOC_Os09g25540
Target Sequence 
GCTCCATCGGATACATTCCTCCAGAGTACGGGTATGGCTCGAACCCGACGACGAAGGGCGACGTGTACAGCTTCGGCGTG
CTGGTGCTGGAGATGGTGACGAGGAAGAAACCGATCGACGACATGTTCGACGCGGGGCTGAGCTTGCACAAGTGGGTGAA
GAACCACTACCACGGCCGGGCCGACGCGGTGGTCGACCCGGCTCTGGCGCGCATGGTGCGGGACCAGACGCCGGAGGTCA
GGAGGATGTCCGACGTGGCCATCGGCGAGCTGCTGGAGCTCGGCATCCTCTGCACGCAGGAGAGCGCGGCCGTGCGCCCG
ACCATGATGGACGCCGCCGACGACCTGGACCGGCTCAAGCGGTACATCGGCGGTGAGACCACGGCCACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis