Browse Element(s) Details


Os.47386.1.S1_at

Description gb:AK120024.1
DB_XREF= gi:37989647
TID=Os.47386.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-186-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C07, full insert sequence.
FL= gb:AK120024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2557010/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25540OsAffx.17892.1.S1_at11/119+15319528..15322850Leucine Rich Repeat family protein
LOC_Os09g25550Os.16309.1.S1_at11/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25550Os.23249.1.A1_at1/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed
LOC_Os09g25570Os.47386.1.S1_at10/119+15343636..15346098Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g25580Os.11912.1.S1_at11/119+15348087..15354532MGDG synthase type A, putative, expressed
LOC_Os09g25590Os.4635.1.S1_at11/119+15357372..15359696Tsi1-interacting protein TSIP1, putative, expressed
LOC_Os09g25600NANA9+15363890..15368113ovule development protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47386.1.S1_at--1054--1091Chr09:15345541..15345565 (25 bp)
AGTGGAGTGCTCTACTTTGTCAGCA
LOC_Os09g25570
Os.47386.1.S1_at--520--7111Chr09:15345559..15345583 (25 bp)
GTCAGCAGTGATTCTTCTCAGGTTT
LOC_Os09g25570
Os.47386.1.S1_at--710--9451Chr09:15345591..15345615 (25 bp)
TCTGGCCTCCCTGAAATCTGAGTAT
LOC_Os09g25570
Os.47386.1.S1_at--1068--7111Chr09:15345658..15345682 (25 bp)
GTCATATTTGACACTCTAGGATCTC
LOC_Os09g25570
Os.47386.1.S1_at--166--4871Chr09:15345755..15345779 (25 bp)
GCTATGTGAATATCCCTATACCTGG
LOC_Os09g25570
Os.47386.1.S1_at--882--3691Chr09:15345770..15345794 (25 bp)
CTATACCTGGAGATCTGTTTTGAGA
LOC_Os09g25570
Os.47386.1.S1_at--947--3551NONE
CATCTATAATTGCTTCGTTCTGTTT
NONE
Os.47386.1.S1_at--607--9171Chr09:15345888..15345912 (25 bp)
TGCCGTTTCTTTGTGCTTCAGTTCA
LOC_Os09g25570
Os.47386.1.S1_at--752--8691Chr09:15345899..15345923 (25 bp)
TGTGCTTCAGTTCATCCTAGATTAA
LOC_Os09g25570
Os.47386.1.S1_at--858--9591Chr09:15345970..15345994 (25 bp)
TCATTAGATCCTACAACTTCCTTGT
LOC_Os09g25570
Os.47386.1.S1_at--1014--6431Chr09:15346014..15346038 (25 bp)
GATCATCCAGTGCATATTGACAACA
LOC_Os09g25570
Target Sequence 
AGTGGAGTGCTCTACTTTGTCAGCAGTGATTCTTCTCAGGTTTGCTTGGCTCTGGCCTCCCTGAAATCTGAGTATGAAAC
TTCAATCATTGGTAATTACCAGCAGAAGAATCTGAGGGTCATATTTGACACTCTAGGATCTCAAATTGGATTTGCACAAG
AGACTTGTGATTATATTTAACATGATTTGATTTGGAGGGGGAAGGGGGCCATGAGCTATGTGAATATCCCTATACCTGGA
GATCTGTTTTGAGATTACTTCTGGTAATTGGCAAATGGTAGTACAGTATTAGTTATTGTCAAATGTACAAGCATCTATAA
TTGCTTCGTTCTGTTTTTTTTTTTTNACTGCCGTTTCTTTGTGCTTCAGTTCATCCTAGATTAATATCGTTTCAAGAAAC
AAGTGGATTTTTTTTGTTTGTCTTCTTGTTTCATTAGATCCTACAACTTCCTTGTAATTTCAGATCCTACTGTAGATCAT
CCAGTGCATATTGACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis