Browse Element(s) Details


Os.11912.1.S1_at

Description gb:AU057037
DB_XREF= gi:4715921
DB_XREF=AU057037
CLONE=S21084_2Z
TID=Os.11912.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11912 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_194906.1 (A.thaliana) monogalactosyldiacylglycerol synthase - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2558011/11MGDG synthase type A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25550Os.16309.1.S1_at11/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25550Os.23249.1.A1_at1/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed
LOC_Os09g25570Os.47386.1.S1_at10/119+15343636..15346098Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g25580Os.11912.1.S1_at11/119+15348087..15354532MGDG synthase type A, putative, expressed
LOC_Os09g25590Os.4635.1.S1_at11/119+15357372..15359696Tsi1-interacting protein TSIP1, putative, expressed
LOC_Os09g25600NANA9+15363890..15368113ovule development protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0019375biological_processgalactolipid biosynthesis
GO:0009706cellular_componentchloroplast inner membrane
GO:0009707cellular_componentchloroplast outer membrane
GO:0009941cellular_componentchloroplast envelope
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035250molecular_functionUDP-galactosyltransferase activity
GO:0046509molecular_function1,2-diacylglycerol 3-beta-galactosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11912.1.S1_at--445--651Chr09:15349319..15349343 (25 bp)
ATGCATGGGTGCTTGTGACTGTATA
LOC_Os09g25580
Os.11912.1.S1_at--346--7831Chr09:15349169..15349193 (25 bp)
GGTACAATTGCAGAGGCCATGATTC
LOC_Os09g25580
Os.11912.1.S1_at--61--731Chr09:15349151..15349175 (25 bp)
ATGATTCGTGGCCTGCCCATTATAC
LOC_Os09g25580
Os.11912.1.S1_at--617--5411Chr09:15348511..15348535 (25 bp)
GAAGCTGGCAATGTTCCATATGTTG
LOC_Os09g25580
Os.11912.1.S1_at--1125--11Chr09:15348436..15348460 (25 bp)
ATTGTAGCCGATTGGTTTGGCCCTA
LOC_Os09g25580
Os.11912.1.S1_at--544--10671Chr09:15348420..15348444 (25 bp)
TTGGCCCTAGGTCAGACGAGCTCAA
LOC_Os09g25580
Os.11912.1.S1_at--997--571Chr09:15348381..15348405 (25 bp)
ATGCCTTGAAACTAGCGCGACCGGA
LOC_Os09g25580
Os.11912.1.S1_at--648--3171Chr09:15348344..15348368 (25 bp)
AATTGTCCACGATCTGCATGAGTTA
LOC_Os09g25580
Os.11912.1.S1_at--101--10231Chr09:15348304..15348328 (25 bp)
TTTGTACCCCAATATGCGTGTGCAT
LOC_Os09g25580
Os.11912.1.S1_at--588--9251Chr09:15348272..15348296 (25 bp)
TCCTACCATCCTTAGCGAGTTTAGT
LOC_Os09g25580
Os.11912.1.S1_at--231--10731Chr09:15348119..15348143 (25 bp)
TTGCTTGTACATGACTGTTGGGACT
LOC_Os09g25580
Target Sequence 
ATGCATGGGTGCTTGTGACTGTATAATTACAAAGGCNGGGCCTGGTACAATTGCAGAGGCCATGATTCGTGGCCTGCCCA
TTATACTAAATGGATATATTGCTGGTCAGGAAGCTGGCAATGTTCCATATGTTGTTGATAATGGATGTGGGAAGTTCTCA
AAATCTCCAGAACAAATTGCAAAGATTGTAGCCGATTGGTTTGGCCCTAGGTCAGACGAGCTCAAAATGATGTCTCAAAA
TGCCTTGAAACTAGCGCGACCGGATGCNAGTGTTTAAAATTGTCCACGATCTGCATGAGTTAGTCAGGCAAAAATGTTTT
GTACCCCAATATGCGTGTGCATCATAAACTCCTACCATCCTTAGCGAGTTTAGTTAATTCTATTATTTTTTGTGCGGCAT
TAGTAACTAGTTTATCTGTGAGAATTCATAAATATCANTTGATTTGGAAATTTTCTCCATGATAGAAAAAGGTCATGATC
CAANTTTGGTTTTCCTCAATATTTTGCTTGTACATGACTGTTGGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis