Browse Element(s) Details


OsAffx.26809.1.S1_at

Description tigr:9633.m00893
TID=OsAffx.26809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1029011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10270OsAffx.29755.1.S1_s_at9/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.4.S1_x_at5/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.3.S1_x_at5/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.2.S1_x_at4/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.5.S1_x_at2/115+5581558..5588945hypothetical protein
LOC_Os05g10280OsAffx.30941.5.S1_x_at11/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.9.S1_x_at7/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.1.S1_x_at5/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.2.S1_x_at5/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10290OsAffx.26809.1.S1_at11/115+5600025..5600425hypothetical protein
LOC_Os05g10300NANA5+5602517..5603188hypothetical protein
LOC_Os05g10310Os.24864.1.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.3.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.2.S1_at9/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10320OsAffx.26810.1.S1_at11/115+5615175..5615447hypothetical protein
LOC_Os05g10330OsAffx.26811.1.S1_at10/115+5617833..5620429HAD superfamily phosphatase containing protein
LOC_Os05g10340NANA5+5623293..5626028transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26809.1.S1_at--268--311Chr05:5600371..5600395 (25 bp)
ATAGCGATGTCGGTGGTGTTGTTCA
LOC_Os05g10290
OsAffx.26809.1.S1_at--703--3931Chr05:5600297..5600321 (25 bp)
CGGCGGCCTCTATCGCCAGATGTTG
LOC_Os05g10290
OsAffx.26809.1.S1_at--66--9551Chr05:5600289..5600313 (25 bp)
TCTATCGCCAGATGTTGCCCTTGTG
LOC_Os05g10290
OsAffx.26809.1.S1_at--117--1311Chr05:5600280..5600304 (25 bp)
AGATGTTGCCCTTGTGGCGTCGGCT
LOC_Os05g10290
OsAffx.26809.1.S1_at--230--6231Chr05:5600235..5600259 (25 bp)
GATGGCCGGATCGAGATCCTAGGTC
LOC_Os05g10290
OsAffx.26809.1.S1_at--431--6371Chr05:5600221..5600245 (25 bp)
GATCCTAGGTCCAGATCTAGCGCAT
LOC_Os05g10290
OsAffx.26809.1.S1_at--932--3431Chr05:5600210..5600234 (25 bp)
CAGATCTAGCGCATCCTCAGTCGAG
LOC_Os05g10290
OsAffx.26809.1.S1_at--726--9251Chr05:5600148..5600221 (25 bp)
TCCTCAGTCGAGGTACCATTCGGTG
LOC_Os05g10290
OsAffx.26809.1.S1_at--22--9391Chr05:5600141..5600162 (22 bp)
TCGAGGTACCATTCGGTGTGCAGGT
LOC_Os05g10290
OsAffx.26809.1.S1_at--1095--1731Chr05:5600134..5600158 (25 bp)
ACCATTCGGTGTGCAGGTGGTATTT
LOC_Os05g10290
OsAffx.26809.1.S1_at--576--4251Chr05:5600098..5600122 (25 bp)
CCGTGGATGCTTTGGTTTACAGGGT
LOC_Os05g10290
Target Sequence 
ATAGCGATGTCGGTGGTGTTGTTCACGGATCCGGCGATGGCGCCGCGTCCGGTGGTGGAAGGAACGTGCAGCGCCGGCGG
CCTCTATCGCCAGATGTTGCCCTTGTGGCGTCGGCTGGCGACGGTGGTGCAAGGAGGATGGCCGGATCGAGATCCTAGGT
CCAGATCTAGCGCATCCTCAGTCGAGGTACCATTCGGTGTGCAGGTGGTATTTGGGAGCTTCCGCCGTGGATGCTTTGGT
TTACAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis