Browse Element(s) Details


OsAffx.31863.1.S1_at

Description tigr:9640.m02322
TID=OsAffx.31863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2438011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24320Os.51787.1.S1_at11/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320Os.48426.1.A1_at5/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.25760.1.S1_x_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.31219.1.S1_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24330Os.57108.1.S1_at11/1112+13882818..13885562expressed protein
LOC_Os12g24340OsAffx.31862.1.S1_at11/1112+13888337..13889009hypothetical protein
LOC_Os12g24350OsAffx.19799.1.S1_at11/1112+13889667..13890262hypothetical protein
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24380OsAffx.31863.1.S1_at11/1112+13902675..13903589hypothetical protein
LOC_Os12g24390OsAffx.31864.1.S1_at11/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24390Os.9218.1.S1_at10/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24400OsAffx.30941.5.S1_x_at8/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.1.S1_x_at7/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.9.S1_x_at4/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.2.S1_x_at3/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24410OsAffx.29755.4.S1_x_at11/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.2.S1_x_at8/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.5.S1_x_at6/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.1.S1_s_at5/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.3.S1_x_at2/1112+13922141..13929900hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31863.1.S1_at--325--8471Chr12:13903530..13903554 (25 bp)
TGGCCCTGAGCCTAACCAGATTAGC
LOC_Os12g24380
OsAffx.31863.1.S1_at--222--1651Chr12:13903508..13903532 (25 bp)
AGCGAAGAGCTTACGTGCTTTCTTG
LOC_Os12g24380
OsAffx.31863.1.S1_at--749--6511Chr12:13903460..13903484 (25 bp)
GATTTGGCGAAGCTCGTGACTTCCA
LOC_Os12g24380
OsAffx.31863.1.S1_at--181--7371Chr12:13903445..13903469 (25 bp)
GTGACTTCCAGAGCTGTGACCGACG
LOC_Os12g24380
OsAffx.31863.1.S1_at--521--1851Chr12:13903395..13903419 (25 bp)
ACGACAATCAGACCGGTGTATTCAC
LOC_Os12g24380
OsAffx.31863.1.S1_at--482--6871Chr12:13903378..13903402 (25 bp)
GTATTCACGGCCTTCATCGACGCAA
LOC_Os12g24380
OsAffx.31863.1.S1_at--751--9891Chr12:13903332..13903353 (22 bp)
TACTCCCGGAGGTGCTTTGGCGTGC
LOC_Os12g24380
OsAffx.31863.1.S1_at--696--2671Chr12:13902829..13902985 (25 bp)
AAGCGAAACTCTCGTGTGTCCATTC
LOC_Os12g24380
OsAffx.31863.1.S1_at--634--111Chr12:13902808..13902832 (25 bp)
ATTCTCCTAGTGAGCTCCCACAAGT
LOC_Os12g24380
OsAffx.31863.1.S1_at--278--6031Chr12:13902777..13902801 (25 bp)
GAGAGGAACTAGAGCGCCACATCTT
LOC_Os12g24380
OsAffx.31863.1.S1_at--772--992Chr08:11355683..11355705 (23 bp)
AGGATGTGTCTTGAGGCACTTGCCA
NONE
Target Sequence 
TGGCCCTGAGCCTAACCAGATTAGCGAAGAGCTTACGTGCTTTCTTGGGGCTTCAATCTTCAAGGAGGAGGATTTGGCGA
AGCTCGTGACTTCCAGAGCTGTGACCGACGGGCAGACCGGCGTATCCTCGCCCCTACGACAATCAGACCGGTGTATTCAC
GGCCTTCATCGACGCAAGGCTTCGGTTCCCCTGCGACAACCTACTCCCGGAGGTGCTTTGGCGTGCATGAAAGAAATATG
CAATTTGAAAAGCAAAATATGCAATCTACTACAAGTTACCTCAGTGGGGAAGAGATATCTCCCCCAAGCTTGCTTTTCGC
TCAGGGCCCCTGATAGGGTTGAATTGCTGAAAGCGAAACTCTCGTGTGTCCATTCTCCTAGTGAGCTCCCACAAGTCCCC
TCGAGAGGAACTAGAGCGCCACATCTTGGAGATGGGTGGCATGCCACTAGTGCTGGAGGAATGGGAGTTCCCATAGGATG
TGTCTTGAGGCACTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis