Browse Element(s) Details


Os.48426.1.A1_at

Description gb:CR282623
DB_XREF= gi:44669189
DB_XREF=CR282623
CLONE=y693e07p3
TID=Os.48426.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48426 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g243205/11Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os09g180801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g020941/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g423191/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24290NANA12+13852652..13854807retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24300OsAffx.18568.1.S1_at1/1112+13857953..13860736retrotransposon protein, putative, unclassified
LOC_Os12g24310OsAffx.19798.1.S1_at11/1112+13872519..13873557hypothetical protein
LOC_Os12g24320Os.51787.1.S1_at11/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320Os.48426.1.A1_at5/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.25760.1.S1_x_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.31219.1.S1_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24330Os.57108.1.S1_at11/1112+13882818..13885562expressed protein
LOC_Os12g24340OsAffx.31862.1.S1_at11/1112+13888337..13889009hypothetical protein
LOC_Os12g24350OsAffx.19799.1.S1_at11/1112+13889667..13890262hypothetical protein
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24380OsAffx.31863.1.S1_at11/1112+13902675..13903589hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016789molecular_functioncarboxylic ester hydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48426.1.A1_at--388--6511Chr12:13878104..13878128 (25 bp)
GATATTACTAGCAAGGTGACAACTA
LOC_Os12g24320
Os.48426.1.A1_at--1058--7931NONE
GGATAAGTATTTTTCTACACCTAAG
NONE
Os.48426.1.A1_at--1152--9831NONE
TACACCTAAGTGTTATGGCACCCAT
NONE
Os.48426.1.A1_at--995--10091Chr12:13878158..13878182 (25 bp)
TATGGCACCCATCATTTACTAGCGA
LOC_Os12g24320
Os.48426.1.A1_at--530--1811NONE
ACCCATCATTTACTAGCGACTCAAA
NONE
Os.48426.1.A1_at--549--2452Chr12:13878237..13878261 (25 bp)
AACACAAACATGCAAGACTATCTAC
LOC_Os12g24320
Os.48426.1.A1_at--304--3535Chr12:13878245..13878269 (25 bp)
CATGCAAGACTATCTACAACTAGAG
LOC_Os12g24320
Os.48426.1.A1_at--530--10031NONE
TAGATAGTTAATAGTACCCGTACAT
NONE
Os.48426.1.A1_at--397--291NONE
ATAGTACCCGTACATCGCAGATAAA
NONE
Os.48426.1.A1_at--314--87911Chr08:20564637..20564690 (25 bp)
TGTTATTTTTATTTCTTCATGTGTA
NONE
Os.48426.1.A1_at--777--74510Chr12:13878380..13878404 (25 bp)
GTGTCTTATATTATCATAGTCTATC
LOC_Os12g24320
Target Sequence 
GATATTACTAGCAAGGTGACAACTAAGGATAAGTATTTTTCTACACCTAAGTGTTATGGCACCCATCATTTACTAGCGAC
TCAAATAGTTATTGAAAAAAAATTGTAACATTAATTGTGATGATATAAGTTTAAACACAAACATGCAAGACTATCTACAA
CTAGAGAAACAAAATTAACAAAATTAGATAGTTAATAGTACCCGTACATCGCAGATAAAATTTGTTATTTTTATTTCTTC
ATGTGTAGATTGAATTTAGACTTACATATTTGTATAGTGTCTTATATTATCATAGTCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48426.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis