Browse Element(s) Details


OsAffx.19798.1.S1_at

Description tigr:9640.m02316
TID=OsAffx.19798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2431011/11hypothetical protein
LOC_Os05g163201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24280NANA12+13848654..13848967hypothetical protein
LOC_Os12g24290NANA12+13852652..13854807retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24300OsAffx.18568.1.S1_at1/1112+13857953..13860736retrotransposon protein, putative, unclassified
LOC_Os12g24310OsAffx.19798.1.S1_at11/1112+13872519..13873557hypothetical protein
LOC_Os12g24320Os.51787.1.S1_at11/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320Os.48426.1.A1_at5/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.25760.1.S1_x_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.31219.1.S1_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24330Os.57108.1.S1_at11/1112+13882818..13885562expressed protein
LOC_Os12g24340OsAffx.31862.1.S1_at11/1112+13888337..13889009hypothetical protein
LOC_Os12g24350OsAffx.19799.1.S1_at11/1112+13889667..13890262hypothetical protein
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19798.1.S1_at--924--7571Chr12:13872844..13872863 (20 bp)
GGGCTGTGGATCTACCACTACGAAG
LOC_Os12g24310
OsAffx.19798.1.S1_at--1083--5515Chr12:13872881..13872905 (25 bp)
GAAAATGATTTTCACAGGCCTTTGT
LOC_Os12g24310
OsAffx.19798.1.S1_at--359--10251Chr12:13872901..13872925 (25 bp)
TTTGTGTACAAGTGGTCATTTCCCC
LOC_Os12g24310
OsAffx.19798.1.S1_at--64--5531Chr12:13872932..13872956 (25 bp)
GAAAAACTATTTATGGCTGCCTGGG
LOC_Os12g24310
OsAffx.19798.1.S1_at--570--7551Chr12:13872975..13872999 (25 bp)
GTGGCCCTAGCTTAGGAACTGCGAA
LOC_Os12g24310
OsAffx.19798.1.S1_at--679--2551Chr12:13872991..13873134 (25 bp)
AACTGCGAAGGTGAGTCGCCAGCCT
LOC_Os12g24310
OsAffx.19798.1.S1_at--909--4411Chr12:13873139..13873163 (25 bp)
GCCAGAGCCATTTTGATCTACACAC
LOC_Os12g24310
OsAffx.19798.1.S1_at--51--1111Chr12:13873242..13873266 (25 bp)
AGTGGTCACCTCCATAGCGGGAAGA
LOC_Os12g24310
OsAffx.19798.1.S1_at--475--5971Chr12:13873273..13873297 (25 bp)
GAGAAGCTCCGCTGGCCAATGACGC
LOC_Os12g24310
OsAffx.19798.1.S1_at--185--451Chr12:13873302..13873326 (25 bp)
ATCTATGCTGCCGATGTCTATTCCG
LOC_Os12g24310
OsAffx.19798.1.S1_at--890--4731Chr12:13873367..13873391 (25 bp)
GCTGTTGGCAGATCCACTTTCGCGG
LOC_Os12g24310
Target Sequence 
GGGCTGTGGATCTACCACTACGAAGATGGAGATGTTGCCTACGAAAATGATTTTCACAGGCCTTTGTGTACAAGTGGTCA
TTTCCCCCGCCTGGAAAAACTATTTATGGCTGCCTGGGAAAACGATTTTCCTAGTAGTGGCCCTAGCTTAGGAACTGCGA
AGGTGAGTCGCCAGCCTCGCCGCCAGAGCCATTTTGATCTACACACCGACCAGCGCCACCTCAGCCCCCGCACTAGGAAG
CATGGTGGTGGCCAGCGAAGGATGATAAGAGAAGGGGGTATGGCAGTGGTCACCTCCATAGCGGGAAGACACTGCGAGAA
GCTCCGCTGGCCAATGACGCCCCTATCTATGCTGCCGATGTCTATTCCGCCGCCCCGACCATCACTTCAAGCTGATCCGC
CCGACCACCGCTGTTGGCAGATCCACTTTCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis