Browse Element(s) Details

OsAffx.27969.1.S1_x_at

Description

tigr:9634.m03514
TID=OsAffx.27969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g36930	11/11	HSF-type DNA-binding domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g36890	Os.49494.1.S1_at	1/11	6	+	21734128..21738841	Glycosyl transferase, putative
LOC_Os06g36900	OsAffx.31869.1.S1_at	11/11	6	+	21740287..21741402	retrotransposon protein, putative, unclassified
LOC_Os06g36900	OsAffx.31869.5.S1_x_at	4/11	6	+	21740287..21741402	retrotransposon protein, putative, unclassified
LOC_Os06g36900	OsAffx.31869.3.S1_s_at	3/11	6	+	21740287..21741402	retrotransposon protein, putative, unclassified
LOC_Os06g36900	OsAffx.31869.4.S1_x_at	1/11	6	+	21740287..21741402	retrotransposon protein, putative, unclassified
LOC_Os06g36910	OsAffx.15786.1.S1_at	11/11	6	+	21749359..21751422	Rf1 protein, mitochondrial precursor, putative
LOC_Os06g36920	OsAffx.5033.1.S1_at	11/11	6	+	21754621..21757567	thromboxane-A synthase, putative, expressed
LOC_Os06g36920	OsAffx.5032.1.S1_at	7/11	6	+	21754621..21757567	thromboxane-A synthase, putative, expressed
LOC_Os06g36930	OsAffx.27969.1.S1_x_at	11/11	6	+	21760307..21761424	HSF-type DNA-binding domain containing protein
LOC_Os06g36940	OsAffx.15787.3.S1_at	10/11	6	+	21762419..21764047	expressed protein
LOC_Os06g36950	Os.20602.2.S1_x_at	11/11	6	+	21764817..21767012	hAT family dimerisation domain containing protein
LOC_Os06g36960	OsAffx.29755.2.S1_x_at	11/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.2.S1_at	11/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.4.S1_x_at	9/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.5.S1_x_at	9/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.1.S1_s_at	6/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.3.S1_x_at	4/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36970	OsAffx.30941.2.S1_x_at	9/11	6	+	21779781..21783748	transposon protein, putative, unclassified
LOC_Os06g36970	OsAffx.30941.9.S1_x_at	8/11	6	+	21779781..21783748	transposon protein, putative, unclassified
LOC_Os06g36970	OsAffx.30941.5.S1_x_at	7/11	6	+	21779781..21783748	transposon protein, putative, unclassified
LOC_Os06g36970	OsAffx.30941.1.S1_x_at	4/11	6	+	21779781..21783748	transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27969.1.S1_x_at--987--605	1	Chr06:21760768..21760792 (25 bp)	GAGTTCGCCAACGAGGACTTCCTCG	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--458--121	1	Chr06:21760769..21760793 (25 bp)	AGTTCGCCAACGAGGACTTCCTCGG	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--72--187	1	Chr06:21760855..21760879 (25 bp)	ACGACGCCGCGTGCTGTGAACTGCG	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--1092--151	1	Chr06:21761067..21761087 (21 bp)	AGCAGAGCCCCGACGTCCTCGACAA	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--39--335	1	Chr06:21761101..21761125 (25 bp)	CACGCCGCGGCGGTCGAACGAAAGA	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--114--565	1	Chr06:21761200..21761224 (25 bp)	GACACCAGCCATAGCACGGGCGGCG	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--936--467	1	Chr06:21761224..21761248 (25 bp)	GCGGTGACCACGGACATGATATGGT	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--1045--431	1	Chr06:21761231..21761255 (25 bp)	CCACGGACATGATATGGTACGAGCT	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--1102--565	1	Chr06:21761236..21761260 (25 bp)	GACATGATATGGTACGAGCTGCTCG	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--922--209	1	Chr06:21761282..21761306 (25 bp)	ACATCGAGGTGGACCAGCTCGTCGC	LOC_Os06g36930
OsAffx.27969.1.S1_x_at--597--415	1	Chr06:21761322..21761346 (25 bp)	CGCCGACACGGCATCGGAGGCGGAG	LOC_Os06g36930

Target Sequence

GAGTTCGCCAACGAGGACTTCCTCGGCGGGCAGCGCCACCTCCTCGCCAACATCCGCCGCCGCCGCCGCGGCGCCGGCAC
GGGCTCGACGACGCCGCGTGCTGTGAACTGCGGCGGCGGCGGCGGCGAGGGGGAGGTGGAGAGGCTGAGGAGGGACAAGG
AGGCGCTGGCGAGGGAGCTGGCGCGGCTGCGGCGGCAGCAGCAGGAGGCCCGCGCGCAGCTGCTCGACATGGAGCGCCGG
GTGCGGGGCACCGAGCGGCGGCAGGAGCAGAGCCCCGACGTCCTCGACAACATCGCGCGCCGCCACGCCGCGGCGGTCGA
ACGAAAGAAGCGGCGGATGCTCGCCGCCGCCGCGGACGACGACGGCCTCACCTTCGAGGCGCTGGCGCTGGCCGCGGCGG
CCGACACCAGCCATAGCACGGGCGGCGCGGTGACCACGGACATGATATGGTACGAGCTGCTCGGCGAGGAGCAGGCGGAG
ATCGACATCGAGGTGGACCAGCTCGTCGCCTCCGCCTCCGCCGCCGCCGACACGGCATCGGAGGCGGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis