Browse Element(s) Details


OsAffx.18817.1.S1_at

Description tigr:9639.m01190
TID=OsAffx.18817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1243011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12380OsAffx.7093.1.S1_at11/1111+6913903..6914426expressed protein
LOC_Os11g12390OsAffx.18814.1.S1_at11/1111+6916189..6916581hypothetical protein
LOC_Os11g12400NANA11+6917876..6918292hypothetical protein
LOC_Os11g12410OsAffx.18815.1.S1_x_at11/1111+6920881..6922610Serpin family protein
LOC_Os11g12410OsAffx.18815.1.S1_at11/1111+6920881..6922610Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_x_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12430OsAffx.18817.1.S1_at11/1111+6938707..6942622hypothetical protein
LOC_Os11g12440OsAffx.25936.7.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.1.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.2.S1_x_at3/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.5.S1_x_at2/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.10827.1.S1_x_at10/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.46055.2.S1_x_at5/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12460OsAffx.18815.1.S1_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12460OsAffx.18815.1.S1_x_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12470Os.55418.1.S1_at11/1111+6964096..6966445expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18817.1.S1_at--491--4131Chr11:6940614..6940638 (25 bp)
CGCTACGTTGTCTGTTGTTGTTTTC
LOC_Os11g12430
OsAffx.18817.1.S1_at--431--10391Chr11:6940634..6940658 (25 bp)
TTTTCTCTGCGGTTGCTGGAATTTT
LOC_Os11g12430
OsAffx.18817.1.S1_at--892--8011Chr11:6941803..6941827 (25 bp)
GGAGGACACACCCACTAAGACAAAT
LOC_Os11g12430
OsAffx.18817.1.S1_at--535--10471Chr11:6941830..6941854 (25 bp)
TTACTTCCGTTCCAACCAGTTGATG
LOC_Os11g12430
OsAffx.18817.1.S1_at--707--2591Chr11:6941893..6941917 (25 bp)
AACGCCTGACGAGAAGACCGTGGTT
LOC_Os11g12430
OsAffx.18817.1.S1_at--965--10591Chr11:6942052..6942076 (25 bp)
TTCTGATGCAGCCAACGATGATTCT
LOC_Os11g12430
OsAffx.18817.1.S1_at--580--6291Chr11:6942068..6942092 (25 bp)
GATGATTCTGCCAACGCAGGGCACT
LOC_Os11g12430
OsAffx.18817.1.S1_at--285--9351Chr11:6942092..6942116 (25 bp)
TCGACCCGTTTTGGCCTGAATGAGT
LOC_Os11g12430
OsAffx.18817.1.S1_at--136--3971Chr11:6942146..6942170 (25 bp)
CGGATGTGTTGTTGTATGCCAGCTA
LOC_Os11g12430
OsAffx.18817.1.S1_at--552--10491Chr11:6942543..6942567 (25 bp)
TTAAATCTCCGACTATAGCTGCCGC
LOC_Os11g12430
OsAffx.18817.1.S1_at--602--4871Chr11:6942566..6942590 (25 bp)
GCTATGTCCGGTTATATCTGTTTGA
LOC_Os11g12430
Target Sequence 
CGCTACGTTGTCTGTTGTTGTTTTCTCTGCGGTTGCTGGAATTTTGCATTTGATGCAAGATACAGACGAAGCTCGGAAGG
AGGACACACCCACTAAGACAAATCCTTACTTCCGTTCCAACCAGTTGATGGAAGACTTGATACGAGAGAGGGCGTCTTAC
AACGAAACAACGCCTGACGAGAAGACCGTGGTTCGAGAGTACATGGAGGATGATCAAGCCATAAGGGCAAGGTTCAAGGA
TTGGATGAAGGAGCATGGCAGGACATACAAGCAGGACGAGGTGGAGGAGGCTAGGCGATTCAAAATATTCAAGTCAGTTG
CAAGATTTTCTGATGCAGCCAACGATGATTCTGCCAACGCAGGGCACTCGACCCGTTTTGGCCTGAATGAGTTTTCAGAC
TGGAACCAGGAAGAACTTGCTCGGATGTGTTGTTGTATGCCAGCTAGGAGTGATGGGGATCTGGCATCAGGTATAGCTGA
CATGGAGTACAAGGATCAGGGTTGTTTTAAATCTCCGACTATAGCTGCCGCTATGTCCGGTTATATCTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis