Browse Element(s) Details


OsAffx.18814.1.S1_at

Description tigr:9639.m01185
TID=OsAffx.18814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1239011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12340Os.4192.1.S1_at11/1111+6883826..6891811NB-ARC domain containing protein, expressed
LOC_Os11g12350NANA11+6892425..6894235NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12360Os.47463.1.S1_x_at2/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12360Os.14491.2.S1_x_at2/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12360OsAffx.7093.1.S1_at1/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12370OsAffx.7092.1.S1_at11/1111+6910946..6911387hypothetical protein
LOC_Os11g12380OsAffx.7093.1.S1_at11/1111+6913903..6914426expressed protein
LOC_Os11g12390OsAffx.18814.1.S1_at11/1111+6916189..6916581hypothetical protein
LOC_Os11g12400NANA11+6917876..6918292hypothetical protein
LOC_Os11g12410OsAffx.18815.1.S1_x_at11/1111+6920881..6922610Serpin family protein
LOC_Os11g12410OsAffx.18815.1.S1_at11/1111+6920881..6922610Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_x_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12430OsAffx.18817.1.S1_at11/1111+6938707..6942622hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18814.1.S1_at--447--8371Chr11:6916398..6916422 (25 bp)
GGCGTCGCTCGATGACCTCACGGAG
LOC_Os11g12390
OsAffx.18814.1.S1_at--3--9391Chr11:6916406..6916430 (25 bp)
TCGATGACCTCACGGAGTCCATCCA
LOC_Os11g12390
OsAffx.18814.1.S1_at--588--8031Chr11:6916419..6916443 (25 bp)
GGAGTCCATCCATCGCGTCATGGAG
LOC_Os11g12390
OsAffx.18814.1.S1_at--853--3531Chr11:6916425..6916449 (25 bp)
CATCCATCGCGTCATGGAGGTCGAT
LOC_Os11g12390
OsAffx.18814.1.S1_at--814--531Chr11:6916430..6916454 (25 bp)
ATCGCGTCATGGAGGTCGATCTCGC
LOC_Os11g12390
OsAffx.18814.1.S1_at--656--5771Chr11:6916456..6916480 (25 bp)
GACGAGTCCGCGTCTGGCGAGCCGC
LOC_Os11g12390
OsAffx.18814.1.S1_at--557--4551Chr11:6916499..6916523 (25 bp)
GCGCCTGGCACGATGAGACGCTCAT
LOC_Os11g12390
OsAffx.18814.1.S1_at--271--6311Chr11:6916510..6916534 (25 bp)
GATGAGACGCTCATGCTGTCATATT
LOC_Os11g12390
OsAffx.18814.1.S1_at--278--1391Chr11:6916514..6916538 (25 bp)
AGACGCTCATGCTGTCATATTCTTC
LOC_Os11g12390
OsAffx.18814.1.S1_at--83--631Chr11:6916522..6916546 (25 bp)
ATGCTGTCATATTCTTCCATGGTCA
LOC_Os11g12390
OsAffx.18814.1.S1_at--318--7131Chr11:6916527..6916551 (25 bp)
GTCATATTCTTCCATGGTCACCCTG
LOC_Os11g12390
Target Sequence 
GGCGTCGCTCGATGACCTCACGGAGTCCATCCATCGCGTCATGGAGGTCGATCTCGCCGACGAGTCCGCGTCTGGCGAGC
CGCCCATCTCCTATGCCTGCAGCGCCTGGCACGATGAGACGCTCATGCTGTCATATTCTTCCATGGTCACCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis