Browse Element(s) Details


Os.4192.1.S1_at

Description gb:AB019240.2
DB_XREF= gi:6045130
GEN=RPR1h
TID=Os.4192.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.4192 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) mRNA for RPR1h, complete cds.
PROD=RPR1h
FL= gb:AK111665.1 gb:AB019240.2 gb:AB019186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1234011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12290Os.54539.1.S1_at11/1111+6861269..6863346expressed protein
LOC_Os11g12300OsAffx.7091.1.S1_at11/1111+6867498..6868517NBS-LRR disease resistance protein, putative
LOC_Os11g12310NANA11+6869421..6870989retrotransposon protein, putative, unclassified
LOC_Os11g12320NANA11+6871407..6872879Leucine Rich Repeat family protein
LOC_Os11g12330OsAffx.30940.1.S1_at11/1111+6877310..6880363NB-ARC domain containing protein, expressed
LOC_Os11g12340Os.4192.1.S1_at11/1111+6883826..6891811NB-ARC domain containing protein, expressed
LOC_Os11g12350NANA11+6892425..6894235NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12360Os.47463.1.S1_x_at2/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12360Os.14491.2.S1_x_at2/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12360OsAffx.7093.1.S1_at1/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12370OsAffx.7092.1.S1_at11/1111+6910946..6911387hypothetical protein
LOC_Os11g12380OsAffx.7093.1.S1_at11/1111+6913903..6914426expressed protein
LOC_Os11g12390OsAffx.18814.1.S1_at11/1111+6916189..6916581hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4192.1.S1_at--1030--7871Chr11:6891296..6891320 (25 bp)
GGTTTATATGTTGTGTCATTGCCAA
LOC_Os11g12340
Os.4192.1.S1_at--825--2211Chr11:6891319..6891343 (25 bp)
AAAGTTGGACAATGTCCCTCAAGGC
LOC_Os11g12340
Os.4192.1.S1_at--130--8131Chr11:6891466..6891490 (25 bp)
GGACTAGAAACTTTGCTTACTTTTG
LOC_Os11g12340
Os.4192.1.S1_at--1004--191Chr11:6891498..6891522 (25 bp)
ATTTCTGTCTGGTGATTATGGGCTC
LOC_Os11g12340
Os.4192.1.S1_at--409--8651Chr11:6891516..6891540 (25 bp)
TGGGCTCAGCCACATTATGCATTTA
LOC_Os11g12340
Os.4192.1.S1_at--19--10111Chr11:6891531..6891555 (25 bp)
TATGCATTTAGTCTTTTCCAACAAA
LOC_Os11g12340
Os.4192.1.S1_at--877--10231Chr11:6891628..6891652 (25 bp)
TATTGGCTTTCATGGCCATCAGGAA
LOC_Os11g12340
Os.4192.1.S1_at--741--8431Chr11:6891641..6891665 (25 bp)
GGCCATCAGGAAACTACTTTGTCAT
LOC_Os11g12340
Os.4192.1.S1_at--719--7131Chr11:6891661..6891685 (25 bp)
GTCATATGTCCTATTGTTTTTGCTT
LOC_Os11g12340
Os.4192.1.S1_at--447--51Chr11:6891673..6891697 (25 bp)
ATTGTTTTTGCTTCACAACTTTGCA
LOC_Os11g12340
Os.4192.1.S1_at--510--671Chr11:6891704..6891728 (25 bp)
ATGAAACTGGTCCTTTTATTGTTGA
LOC_Os11g12340
Target Sequence 
GGTTTATATGTTGTGTCATTGCCAAAGTTGGACAATGTCCCTCAAGGCATTGAGTCTCTTAGGTATCTGAAGAAGCTGTG
GCTCTTGGGTCTGCATAAGAATTTCAGGTCTCAGTGGCAAAAAAAATGGAATGCACCAAAAGATGCAACATGTTCCAGAG
CTGCATGTCAAGGACTAGAAACTTTGCTTACTTTTGCAGTATTATTTCTGTCTGGTGATTATGGGCTCAGCCACATTATG
CATTTAGTCTTTTCCAACAAATGATCAGTTTATGACAGATGAGCTAGCGGCACCACTACATCGCAACCTCGTTATTGGAA
ATAAGTCCTGAAATATTGGCTTTCATGGCCATCAGGAAACTACTTTGTCATATGTCCTATTGTTTTTGCTTCACAACTTT
GCAGAATTTATGAAACTGGTCCTTTTATTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis