Browse Element(s) Details


OsAffx.30940.1.S1_at

Description tigr:9639.m01179
TID=OsAffx.30940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1233011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12280OsAffx.7090.1.S1_at11/1111+6855741..6856634hypothetical protein
LOC_Os11g12290Os.54539.1.S1_at11/1111+6861269..6863346expressed protein
LOC_Os11g12300OsAffx.7091.1.S1_at11/1111+6867498..6868517NBS-LRR disease resistance protein, putative
LOC_Os11g12310NANA11+6869421..6870989retrotransposon protein, putative, unclassified
LOC_Os11g12320NANA11+6871407..6872879Leucine Rich Repeat family protein
LOC_Os11g12330OsAffx.30940.1.S1_at11/1111+6877310..6880363NB-ARC domain containing protein, expressed
LOC_Os11g12340Os.4192.1.S1_at11/1111+6883826..6891811NB-ARC domain containing protein, expressed
LOC_Os11g12350NANA11+6892425..6894235NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12360Os.47463.1.S1_x_at2/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12360Os.14491.2.S1_x_at2/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12360OsAffx.7093.1.S1_at1/1111+6896255..6908287transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30940.1.S1_at--459--5351Chr11:6879775..6879799 (25 bp)
GAAGACGCTCGCCTTGAAGCGTATG
LOC_Os11g12330
OsAffx.30940.1.S1_at--860--2891Chr11:6879849..6879873 (25 bp)
AAGGTTTATATGTAGTGTCACTCCC
LOC_Os11g12330
OsAffx.30940.1.S1_at--104--2691Chr11:6879875..6879899 (25 bp)
AAGCTGGACACTATCCCTGAAGGCA
LOC_Os11g12330
OsAffx.30940.1.S1_at--805--5531Chr11:6880027..6880051 (25 bp)
GAAACTTGCTTGTTTTTGCCGTAAT
LOC_Os11g12330
OsAffx.30940.1.S1_at--1136--10271Chr11:6880041..6880065 (25 bp)
TTTGCCGTAATATCTGTCTGGTGAG
LOC_Os11g12330
OsAffx.30940.1.S1_at--1105--7171Chr11:6880056..6880080 (25 bp)
GTCTGGTGAGTCTGTGTTCAGCCAC
LOC_Os11g12330
OsAffx.30940.1.S1_at--805--6751Chr11:6880071..6880095 (25 bp)
GTTCAGCCACACTCCAACAAATGAT
LOC_Os11g12330
OsAffx.30940.1.S1_at--876--10231Chr11:6880164..6880188 (25 bp)
TATTGGCTATCCTAGCCATCAGGGA
LOC_Os11g12330
OsAffx.30940.1.S1_at--852--4431Chr11:6880178..6880202 (25 bp)
GCCATCAGGGAACTCATTTGTCATA
LOC_Os11g12330
OsAffx.30940.1.S1_at--682--5551Chr11:6880247..6880271 (25 bp)
GAAACCAGTCCTTTCATTGTTGAAC
LOC_Os11g12330
OsAffx.30940.1.S1_at--1025--2291Chr11:6880299..6880323 (25 bp)
AAATGGTGGCACCATCACAAATTCA
LOC_Os11g12330
Target Sequence 
GAAGACGCTCGCCTTGAAGCGTATGCCTGATGTAAACCACTTGGAGATCATAGGCGGTGCCCTCCAGCATATTGAAGGTT
TATATGTAGTGTCACTCCCAAAGCTGGACACTATCCCTGAAGGCATTGAGTCCCTTAGGTACCTGAAGAAGCTGTGGCTT
TTGGGTCTGCATAAGAATTTCAGATCTCAGTGGGAAAAAAATGGAATGCAACAAAAGATGCAACATGTTCCAGAGTTGCG
TGTCAAGGACTAGAAACTTGCTTGTTTTTGCCGTAATATCTGTCTGGTGAGTCTGTGTTCAGCCACACTCCAACAAATGA
TCAGTTTATGACAGATGAGCTAGCTGCACCACTACATCACAACCTCATTATTGGAAATAAGTCCTGAAATATTGGCTATC
CTAGCCATCAGGGAACTCATTTGTCATATTTTCTATTGTAGTTTTATTTCTTCACAACTTTGCAGAATTTATGAAACCAG
TCCTTTCATTGTTGAACATATGACATTTGGTGTAGTACCAATTGAAATGGTGGCACCATCACAAATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis