Browse Element(s) Details


OsAffx.7090.1.S1_at

Description tigr:9639.m01174
TID=OsAffx.7090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1228011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12240Os.49400.1.S1_s_at11/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.16205.1.S1_at2/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.20927.1.S1_x_at2/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.29316.1.S1_x_at1/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12250NANA11+6838347..6840120hypothetical protein
LOC_Os11g12260OsAffx.7088.1.S1_at11/1111+6840766..6843840NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12270Os.49584.1.S1_at10/1111+6846676..6849327expressed protein
LOC_Os11g12280OsAffx.7090.1.S1_at11/1111+6855741..6856634hypothetical protein
LOC_Os11g12290Os.54539.1.S1_at11/1111+6861269..6863346expressed protein
LOC_Os11g12300OsAffx.7091.1.S1_at11/1111+6867498..6868517NBS-LRR disease resistance protein, putative
LOC_Os11g12310NANA11+6869421..6870989retrotransposon protein, putative, unclassified
LOC_Os11g12320NANA11+6871407..6872879Leucine Rich Repeat family protein
LOC_Os11g12330OsAffx.30940.1.S1_at11/1111+6877310..6880363NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7090.1.S1_at--60--5771Chr11:6856271..6856295 (25 bp)
GACGAGCTAAACATCCGGGCCATTT
LOC_Os11g12280
OsAffx.7090.1.S1_at--668--1171Chr11:6856052..6856076 (25 bp)
AGTAAGGGCTGCTCGCATATCGGGC
LOC_Os11g12280
OsAffx.7090.1.S1_at--495--4571Chr11:6856022..6856046 (25 bp)
GCGCGCTCTACTCCGAGTGAAGTCA
LOC_Os11g12280
OsAffx.7090.1.S1_at--1160--8771Chr11:6855991..6856015 (25 bp)
TGCGTACCACAAGCTCCGGAGGGAC
LOC_Os11g12280
OsAffx.7090.1.S1_at--580--5311Chr11:6855957..6855981 (25 bp)
GAAGGATGCAGACGACTTCACCCGG
LOC_Os11g12280
OsAffx.7090.1.S1_at--709--8351Chr11:6855911..6855935 (25 bp)
GGCGGAGCTTTCTCAACGATGGTGA
LOC_Os11g12280
OsAffx.7090.1.S1_at--332--1352Chr11:6855881..6855905 (25 bp)
AGAGATTTACTTCGCTCAGCCGGAG
LOC_Os11g12280
OsAffx.7090.1.S1_at--562--8031Chr11:6855854..6855878 (25 bp)
GGAGTAGTCTCAACGGTGGCTTTTC
LOC_Os11g12280
OsAffx.7090.1.S1_at--859--9134Chr01:7206381..7206401 (21 bp)
TGCGGAGATTTACTTCGCTCGGCTG
NONE
OsAffx.7090.1.S1_at--124--8551Chr11:6855794..6855818 (25 bp)
TGGAGCCGGAGCGATCTCGACGCAA
LOC_Os11g12280
OsAffx.7090.1.S1_at--183--5171Chr11:6855773..6855797 (25 bp)
GCAAGCTTCGCCACGGAGATTTACT
LOC_Os11g12280
Target Sequence 
GACGAGCTAAACATCCGGGCCATTTCCACCATCCAGGCCCTTACTCACGCCTTCGGCAGCATCGGGGTCCAGGGCCCCGC
GCCGCCTCCGAACGACAGCGCGGTTGCCGAGAAGCTGCGATGGGTGGAGAAGGCAGGCAGGTTTGCCTCGAAGGCGGCCT
CCAGCTACGGGACGTGGTGCTCGTGGGCAACAACCCGCATGTTGTCCCTTCTGCTTCGGAGTAAGGGCTGCTCGCATATC
GGGCCCTCCGCGCGCTCTACTCCGAGTGAAGTCACCACCCTGCGTACCACAAGCTCCGGAGGGACCTCCTCGAAGAAGGA
TGCAGACGACTTCACCCGGGCGGGGGGGTGGGGGGGGGGGGGCGGAGCTTTCTCAACGATGGTGAGCCACAGAGATTTAC
TTCGCTCAGCCGGAGCCGGAGTAGTCTCAACGGTGGCTTTTCTTTTAGTAAAGCTGCGGAGATTTACTTCGCTCGGCTGG
AGCCGGAGCGATCTCGACGCAAGCTTCGCCACGGAGATTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis