Browse Element(s) Details


Os.49400.1.S1_s_at

Description gb:AK068380.1
DB_XREF= gi:32978398
TID=Os.49400.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146P17, full insert sequence.
FL= gb:AK068380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1224011/11NB-ARC domain containing protein, expressed
LOC_Os11g1196011/11NBS-LRR type disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12200Os.46314.2.S1_x_at5/1111+6794106..6800808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12200Os.10731.2.A1_at3/1111+6794106..6800808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12200Os.45173.1.S1_x_at3/1111+6794106..6800808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12200Os.47114.1.S1_x_at1/1111+6794106..6800808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12200OsAffx.32036.1.S1_at1/1111+6794106..6800808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12210NANA11+6802806..6809560retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12220OsAffx.22896.1.S1_x_at1/1111+6810649..6812931retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g12230NANA11+6815939..6819891retrotransposon protein, putative, unclassified
LOC_Os11g12240Os.49400.1.S1_s_at11/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.16205.1.S1_at2/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.20927.1.S1_x_at2/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.29316.1.S1_x_at1/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12250NANA11+6838347..6840120hypothetical protein
LOC_Os11g12260OsAffx.7088.1.S1_at11/1111+6840766..6843840NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12270Os.49584.1.S1_at10/1111+6846676..6849327expressed protein
LOC_Os11g12280OsAffx.7090.1.S1_at11/1111+6855741..6856634hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49400.1.S1_s_at--43--2912Chr11:6834290..6834314 (25 bp)
AAGGATCAGTGGTTGCATCCATCCC
LOC_Os11g12240
Os.49400.1.S1_s_at--983--9052Chr11:6834303..6834327 (25 bp)
TGCATCCATCCCAGCTTGTTTCTGA
LOC_Os11g12240
Os.49400.1.S1_s_at--494--1332Chr11:6834351..6834375 (25 bp)
AGAGGTCCCGGGACAGCTTCCCAGA
LOC_Os11g12240
Os.49400.1.S1_s_at--96--5632Chr11:6834362..6834386 (25 bp)
GACAGCTTCCCAGAACTTGTGAAAG
LOC_Os11g12240
Os.49400.1.S1_s_at--813--4072Chr11:6834448..6834472 (25 bp)
CGAGCTGGACAGTAAGGTGATAACA
LOC_Os11g12240
Os.49400.1.S1_s_at--157--5532Chr11:6834530..6834554 (25 bp)
GAAAAGATCAACTTCTCTGCTCATG
LOC_Os11g12240
Os.49400.1.S1_s_at--760--3752Chr11:6834549..6834573 (25 bp)
CTCATGCATGGATGGTTGTGTCTCA
LOC_Os11g12240
Os.49400.1.S1_s_at--295--2372Chr11:6834573..6834597 (25 bp)
AAACCTACACTGTGGATGCTCTATT
LOC_Os11g12240
Os.49400.1.S1_s_at--25--9712Chr11:6834757..6834781 (25 bp)
TCAAATACGTGATGCATTCCAGAAT
LOC_Os11g12240
Os.49400.1.S1_s_at--247--9232Chr11:6834774..6834798 (25 bp)
TCCAGAATGACCAAGGAAGTCGCGT
LOC_Os11g12240
Os.49400.1.S1_s_at--1108--8192Chr11:6834788..6834809 (22 bp)
GGAAGTCGCGTAATAATCACAACAC
LOC_Os11g12240
Target Sequence 
AAGGATCAGTGGTTGCATCCATCCCAGCTTGTTTCTGACCCNCTCACTGAGATGGNAAGACAGAGGTCCCGGGACAGCTT
CCCAGAACTTGTGAAAGATGAAGATCTTGTGGGGATTGAAGACANNAGGAGACTGCTGACTGAATGGNTGTACNCNGACG
AGCTGGACAGTAAGGTGATAACAGTGTCAGGTATGGGCGGACTGGGGAAAACCACCCTGGTCACAAATGTGTATGAACGT
GAAAAGATCAACTTCTCTGCTCATGCATGGATGGTTGTGTCTCAAACCTACACTGTGGATGCTCTATTAANGAAGCTGCT
TNGGAAANTTGGTTACACAGAACCACCACTGTCANGTAACATTGACAAAATGGATGTGNATGATTTGAAAGAGGAAATAA
AGCGAATGCTNAAAGNTANAAAATGCTTGATCGTACNTGATGATGTCTGGGACCAAGAAGCATACTTTCAAATACGTGAT
GCATTCCAGAATGACCAAGGAAGTCGCGTAATAATCACAACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49400.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis