Browse Element(s) Details


OsAffx.7088.1.S1_at

Description tigr:9639.m01172
TID=OsAffx.7088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1226011/11NBS-LRR type disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12230NANA11+6815939..6819891retrotransposon protein, putative, unclassified
LOC_Os11g12240Os.49400.1.S1_s_at11/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.16205.1.S1_at2/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.20927.1.S1_x_at2/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12240OsAffx.29316.1.S1_x_at1/1111+6822602..6835576NB-ARC domain containing protein, expressed
LOC_Os11g12250NANA11+6838347..6840120hypothetical protein
LOC_Os11g12260OsAffx.7088.1.S1_at11/1111+6840766..6843840NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g12270Os.49584.1.S1_at10/1111+6846676..6849327expressed protein
LOC_Os11g12280OsAffx.7090.1.S1_at11/1111+6855741..6856634hypothetical protein
LOC_Os11g12290Os.54539.1.S1_at11/1111+6861269..6863346expressed protein
LOC_Os11g12300OsAffx.7091.1.S1_at11/1111+6867498..6868517NBS-LRR disease resistance protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7088.1.S1_at--69--10431Chr11:6841796..6841820 (25 bp)
TTATAGGTGGCTCTCTGTCATGCAT
LOC_Os11g12260
OsAffx.7088.1.S1_at--219--8991Chr11:6841821..6841845 (25 bp)
TGAAGCTTTGTACATCTTGGCACTG
LOC_Os11g12260
OsAffx.7088.1.S1_at--404--10871Chr11:6841837..6841861 (25 bp)
TTGGCACTGCCAAACCTGGACAAAG
LOC_Os11g12260
OsAffx.7088.1.S1_at--865--2391Chr11:6841897..6841921 (25 bp)
AAACTATGGCTGCTGGGCTTGCACA
LOC_Os11g12260
OsAffx.7088.1.S1_at--452--6331Chr11:6841965..6842185 (25 bp)
GATGCAGCATATTCCAGAGTCTTTC
LOC_Os11g12260
OsAffx.7088.1.S1_at--278--771Chr11:6842186..6842210 (25 bp)
ATGTCCCTCAATGCCAGATCAGATG
LOC_Os11g12260
OsAffx.7088.1.S1_at--1073--411Chr11:6842214..6842238 (25 bp)
ATCATCTACTTCTCTCTACAATGGG
LOC_Os11g12260
OsAffx.7088.1.S1_at--287--6311Chr11:6842239..6842258 (20 bp)
GATGAGCTCAGTCTCTCAGGAGGAT
LOC_Os11g12260
OsAffx.7088.1.S1_at--566--2831Chr11:6842888..6842912 (25 bp)
AAGTTAGAGGCTCCACGTGCAACTC
LOC_Os11g12260
OsAffx.7088.1.S1_at--1139--7331Chr11:6842904..6842928 (25 bp)
GTGCAACTCCAATGTATGCCGTGCC
LOC_Os11g12260
OsAffx.7088.1.S1_at--1041--7271Chr11:6842924..6842948 (25 bp)
GTGCCTTCCGAGTTCTCAAAAACTG
LOC_Os11g12260
Target Sequence 
TTATAGGTGGCTCTCTGTCATGCATTGAAGCTTTGTACATCTTGGCACTGCCAAACCTGGACAAAGTCCCACTGGGCATT
GAATCCATTCTCTCCCTGAAGAAACTATGGCTGCTGGGCTTGCACATGGACTTTAGGAAGCAATGGAACAATAGTGGAAT
GCACCAGAAGATGCAGCATATTCCAGAGTCTTTCATGTCCCTCAATGCCAGATCAGATGTACATCATCTACTTCTCTCTA
CAATGGGGATGAGCTCAGTCTCTCAGGAGGATTTGGGTCATCAAAAATGGACCATAACATGTAAACATGGTATACTGGAG
GACAAGTTAGAGGCTCCACGTGCAACTCCAATGTATGCCGTGCCTTCCGAGTTCTCAAAAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis