Browse Element(s) Details


OsAffx.18815.1.S1_x_at

Description tigr:9639.m01189
TID=OsAffx.18815.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serpin (serine protease inhibitor), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1242011/11Serpin family protein
LOC_Os11g1241011/11Serpin family protein
LOC_Os11g1246011/11Serpin family protein
LOC_Os02g579001/11hypothetical protein
LOC_Os11g186601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12370OsAffx.7092.1.S1_at11/1111+6910946..6911387hypothetical protein
LOC_Os11g12380OsAffx.7093.1.S1_at11/1111+6913903..6914426expressed protein
LOC_Os11g12390OsAffx.18814.1.S1_at11/1111+6916189..6916581hypothetical protein
LOC_Os11g12400NANA11+6917876..6918292hypothetical protein
LOC_Os11g12410OsAffx.18815.1.S1_x_at11/1111+6920881..6922610Serpin family protein
LOC_Os11g12410OsAffx.18815.1.S1_at11/1111+6920881..6922610Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_x_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12430OsAffx.18817.1.S1_at11/1111+6938707..6942622hypothetical protein
LOC_Os11g12440OsAffx.25936.7.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.1.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.2.S1_x_at3/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.5.S1_x_at2/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.10827.1.S1_x_at10/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.46055.2.S1_x_at5/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12460OsAffx.18815.1.S1_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12460OsAffx.18815.1.S1_x_at11/1111+6958710..6960024Serpin family protein

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18815.1.S1_x_at--62--1916Chr11:6959456..6959480 (25 bp)
ACGGGTTCAAGGTGCTCAAGATGCC
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--610--6753Chr11:6959460..6959484 (25 bp)
GTTCAAGGTGCTCAAGATGCCGTAC
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--822--1033Chr11:6959639..6959663 (25 bp)
AGGTCGGCGAGTTCAGGATCCCCAG
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--1108--7173Chr11:6959641..6959665 (25 bp)
GTCGGCGAGTTCAGGATCCCCAGGT
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--271--9453Chr11:6959642..6959666 (25 bp)
TCGGCGAGTTCAGGATCCCCAGGTT
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--705--8353Chr11:6959644..6959668 (25 bp)
GGCGAGTTCAGGATCCCCAGGTTCA
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--1119--4613Chr11:6959645..6959669 (25 bp)
GCGAGTTCAGGATCCCCAGGTTCAA
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--722--4073Chr11:6959646..6959670 (25 bp)
CGAGTTCAGGATCCCCAGGTTCAAG
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--1113--6733Chr11:6959649..6959673 (25 bp)
GTTCAGGATCCCCAGGTTCAAGCTC
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--715--10533Chr11:6959650..6959674 (25 bp)
TTCAGGATCCCCAGGTTCAAGCTCT
LOC_Os11g12460
OsAffx.18815.1.S1_x_at--621--7973Chr11:6959654..6959678 (25 bp)
GGATCCCCAGGTTCAAGCTCTCCTT
LOC_Os11g12460
Target Sequence 
ACGGGTTCAAGGTGCTCAAGATGCCGTACNNNNNCNNGNNNNNGNNNNCNNNNNANNNNCNNCGNNNCNGNNNTACTCNN
TGTNNNTCNTCCTCCCCGACNAGCGCNACGGNCTGTNNANCCTNGNNGACAGGATGGNGGCNNNNNNNNNNNNCGGCGGC
GNNNAGGNCTTCCTCNGNGAGCACANGCCGGNGNNNCGCGTCNAGGTCGGCGAGTTCAGGATCCCCAGGTTCAAGCTCTC
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18815.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis