Browse Element(s) Details


OsAffx.12394.1.S1_at

Description tigr:9630.m03680
TID=OsAffx.12394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3833011/11hypothetical protein
LOC_Os11g124801/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38290Os.49646.1.S1_at11/112+23147015..23149010Cytochrome P450 family protein, expressed
LOC_Os02g38300Os.24671.1.A1_at9/112+23153983..23157474SNF7 family protein, expressed
LOC_Os02g38310NANA2+23158663..23159891hypothetical protein
LOC_Os02g38320OsAffx.2905.1.S1_at10/112+23166739..23168824speckle-type POZ protein, putative, expressed
LOC_Os02g38330OsAffx.12394.1.S1_at11/112+23170058..23170436hypothetical protein
LOC_Os02g38340Os.24543.1.S1_at11/112+23171716..23176224Actin-like protein 3, putative, expressed
LOC_Os02g38350Os.54155.1.S1_at11/112+23177262..23180606regulator of chromosome condensation, putative, expressed
LOC_Os02g38360Os.56216.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38360OsAffx.29313.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38370NANA2+23190422..23193828transposon protein, putative, unclassified, expressed
LOC_Os02g38380NANA2+23194524..23200484transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12394.1.S1_at--808--9251Chr02:23170369..23170393 (25 bp)
TCCTCAGCTTCAGGTCTCTGATTCA
LOC_Os02g38330
OsAffx.12394.1.S1_at--952--3391Chr02:23170365..23170389 (25 bp)
CAGCTTCAGGTCTCTGATTCATCAG
LOC_Os02g38330
OsAffx.12394.1.S1_at--529--3872Chr11:6971882..6971918 (24 bp)
CTGATTCATCAGCAAGTTCTTGTTG
LOC_Os11g12480
OsAffx.12394.1.S1_at--59--131Chr02:23170351..23170373 (23 bp)
ATTCATCAGCAAGTTCTTGTTGGAG
LOC_Os02g38330
OsAffx.12394.1.S1_at--1026--5071Chr02:23170189..23170213 (25 bp)
GCAGCCAGCGGGTTCCTCCATGGCA
LOC_Os02g38330
OsAffx.12394.1.S1_at--1088--3971Chr02:23170181..23170205 (25 bp)
CGGGTTCCTCCATGGCAGCGGCGAC
LOC_Os02g38330
OsAffx.12394.1.S1_at--472--1931Chr02:23170155..23170179 (25 bp)
ACGGAAGGAGGCAGCATGCGAGGGA
LOC_Os02g38330
OsAffx.12394.1.S1_at--30--2731Chr02:23170114..23170138 (25 bp)
AAGAAGATGAGGTGGTTCATGGTCA
LOC_Os02g38330
OsAffx.12394.1.S1_at--171--8571Chr02:23170102..23170126 (25 bp)
TGGTTCATGGTCAGGGACTACGCCC
LOC_Os02g38330
OsAffx.12394.1.S1_at--329--10531Chr02:23170099..23170123 (25 bp)
TTCATGGTCAGGGACTACGCCCACG
LOC_Os02g38330
OsAffx.12394.1.S1_at--751--8591Chr02:23170095..23170119 (25 bp)
TGGTCAGGGACTACGCCCACGCGCG
LOC_Os02g38330
Target Sequence 
TCCTCAGCTTCAGGTCTCTGATTCATCAGCAAGTTCTTGTTGGAGAAGGCGCAGCAGCCAGCGGGTTCCTCCATGGCAGC
GGCGACGACGGAAGGAGGCAGCATGCGAGGGAGTGGGAGGAGGAGAGGAAGAAGATGAGGTGGTTCATGGTCAGGGACTA
CGCCCACGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis