Browse Element(s) Details


Os.24543.1.S1_at

Description gb:AK101163.1
DB_XREF= gi:32986372
TID=Os.24543.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24543 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033028A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028A09, full insert sequence.
FL= gb:AK101163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3834011/11Actin-like protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38290Os.49646.1.S1_at11/112+23147015..23149010Cytochrome P450 family protein, expressed
LOC_Os02g38300Os.24671.1.A1_at9/112+23153983..23157474SNF7 family protein, expressed
LOC_Os02g38310NANA2+23158663..23159891hypothetical protein
LOC_Os02g38320OsAffx.2905.1.S1_at10/112+23166739..23168824speckle-type POZ protein, putative, expressed
LOC_Os02g38330OsAffx.12394.1.S1_at11/112+23170058..23170436hypothetical protein
LOC_Os02g38340Os.24543.1.S1_at11/112+23171716..23176224Actin-like protein 3, putative, expressed
LOC_Os02g38350Os.54155.1.S1_at11/112+23177262..23180606regulator of chromosome condensation, putative, expressed
LOC_Os02g38360Os.56216.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38360OsAffx.29313.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38370NANA2+23190422..23193828transposon protein, putative, unclassified, expressed
LOC_Os02g38380NANA2+23194524..23200484transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000902biological_processcellular morphogenesis
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007015biological_processactin filament organization
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009825biological_processmultidimensional cell growth
GO:0009845biological_processseed germination
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005885cellular_componentArp2/3 protein complex
GO:0015629cellular_componentactin cytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24543.1.S1_at--343--9051Chr02:23175316..23175340 (25 bp)
TGCATCTAATGCTCGACTTGGTGGA
LOC_Os02g38340
Os.24543.1.S1_at--2--7511Chr02:23175336..23175479 (25 bp)
GTGGAGATGCAAAGGCCCAACCTAT
LOC_Os02g38340
Os.24543.1.S1_at--96--6951Chr02:23175490..23175514 (25 bp)
GTAGTTAGCCATCCTATTCAAAGAT
LOC_Os02g38340
Os.24543.1.S1_at--425--9951Chr02:23175549..23175767 (25 bp)
TACCGCTGAATTCTACGAGGCTTGC
LOC_Os02g38340
Os.24543.1.S1_at--974--2351Chr02:23175841..23175865 (25 bp)
AAACCACGGCGCAAAGCTTCTGTAG
LOC_Os02g38340
Os.24543.1.S1_at--633--4911Chr02:23175856..23175880 (25 bp)
GCTTCTGTAGACATCACCAGTGGCA
LOC_Os02g38340
Os.24543.1.S1_at--233--5031Chr02:23175948..23175972 (25 bp)
GCAGTAGCCTCGCTGTTATGAGTTG
LOC_Os02g38340
Os.24543.1.S1_at--1090--6631Chr02:23175969..23175993 (25 bp)
GTTGTACAAATCTAGCAGGCGCATA
LOC_Os02g38340
Os.24543.1.S1_at--784--6491Chr02:23175994..23176018 (25 bp)
GATAGATCCACTCTTTCGGTAATAC
LOC_Os02g38340
Os.24543.1.S1_at--1146--7751Chr02:23176120..23176144 (25 bp)
GGTGACGGTGTAGCATTACGACATT
LOC_Os02g38340
Os.24543.1.S1_at--1114--6911Chr02:23176178..23176202 (25 bp)
GTATGTCTCATGCTTATTACGTAGT
LOC_Os02g38340
Target Sequence 
TGCATCTAATGCTCGACTTGGTGGAGATGCAAAGGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGAT
ATGCTGTCTGGTTTGGTGGTTCTGTGCTTGCCTCTACCGCTGAATTCTACGAGGCTTGCCACACAAAAGCAGAGTATGAA
GAGTATGGCGCAAGCATCTGCCGGACGAATNCTGTTTTCAAAGGNATGTACTAAACCACGGCGCAAAGCTTCTGTAGACA
TCACCAGTGGCACCCCCNAACGCGATCCAGCTGCACTGNCCAGCATGGTACAACTGACGTTGGGGACCGAGGGGGATCCT
GCAGTAGCCTCGCTGTTATGAGTTGTACAAATCTAGCAGGCGCATAGATAGATCCACTCTTTCGGTAATACATTCCACAT
GTTCATNANGTTTTTGCTAGCCTAGCAGCAAAAACAATATGACCGAACGGCATGGGCAAAATATATGTTTCATGCTGCTG
TATAATCTTTGTTGGTGACGGTGTAGCATTACGACATTGTTTTTTTTGTTGGTGATTTGGTTTTGATCTTTGTATGTCTC
ATGCTTATTACGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis