Browse Element(s) Details


Os.54155.1.S1_at

Description gb:AK102225.1
DB_XREF= gi:32987434
TID=Os.54155.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087N01, full insert sequence.
FL= gb:AK102225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3835011/11regulator of chromosome condensation, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38300Os.24671.1.A1_at9/112+23153983..23157474SNF7 family protein, expressed
LOC_Os02g38310NANA2+23158663..23159891hypothetical protein
LOC_Os02g38320OsAffx.2905.1.S1_at10/112+23166739..23168824speckle-type POZ protein, putative, expressed
LOC_Os02g38330OsAffx.12394.1.S1_at11/112+23170058..23170436hypothetical protein
LOC_Os02g38340Os.24543.1.S1_at11/112+23171716..23176224Actin-like protein 3, putative, expressed
LOC_Os02g38350Os.54155.1.S1_at11/112+23177262..23180606regulator of chromosome condensation, putative, expressed
LOC_Os02g38360Os.56216.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38360OsAffx.29313.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38370NANA2+23190422..23193828transposon protein, putative, unclassified, expressed
LOC_Os02g38380NANA2+23194524..23200484transposon protein, putative, unclassified
LOC_Os02g38386Os.52123.1.S1_at11/112+23203838..23204587NBS-LRR disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54155.1.S1_at--86--791Chr02:23177926..23177950 (25 bp)
ATGTGAAGGCTGTGCATGTCTCCAC
LOC_Os02g38350
Os.54155.1.S1_at--695--7351Chr02:23177899..23177923 (25 bp)
GTGAATACACCACCTTTGTTGTCTC
LOC_Os02g38350
Os.54155.1.S1_at--606--2171Chr02:23177870..23177894 (25 bp)
AACGGCGATACATACTCCTTTGGAT
LOC_Os02g38350
Os.54155.1.S1_at--831--10851Chr02:23177851..23177875 (25 bp)
TTGGATCCGCTGAATCCCTGAATAT
LOC_Os02g38350
Os.54155.1.S1_at--171--8871Chr02:23177705..23177729 (25 bp)
TGATGCAGATTTTTCTACCCCAAGC
LOC_Os02g38350
Os.54155.1.S1_at--203--6711Chr02:23177582..23177606 (25 bp)
GTTCGCGCTCATGGAATCCGGTAAA
LOC_Os02g38350
Os.54155.1.S1_at--378--10851Chr02:23177523..23177547 (25 bp)
TTGGTGTCAAGCTCTCTGAGGGTCA
LOC_Os02g38350
Os.54155.1.S1_at--991--4031Chr02:23177469..23177493 (25 bp)
CGATCGATCTCTGCTAATTTCAACC
LOC_Os02g38350
Os.54155.1.S1_at--606--3891Chr02:23177412..23177436 (25 bp)
CTGTGATCTGTGGTTAGCATGCCCT
LOC_Os02g38350
Os.54155.1.S1_at--286--1491Chr02:23177397..23177421 (25 bp)
AGCATGCCCTCCTGAATTTCATAGG
LOC_Os02g38350
Os.54155.1.S1_at--224--2051Chr02:23177333..23177357 (25 bp)
ACTTACCTTTGGTTCTTCTCTGAAG
LOC_Os02g38350
Target Sequence 
ATGTGAAGGCTGTGCATGTCTCCACCGGTGAATACACCACCTTTGTTGTCTCCGATAACGGCGATACATACTCCTTTGGA
TCCGCTGAATCCCTGAATATAGGTTTCCAGGAGGATGAGGAAGCAGCAGATGATGCAGATTTTTCTACCCCAAGCTTGGT
AGAATCACTGAAGGTGTTGAATGATAAGGCTGTACAGATTAGCACAACAAATTCTTCATATTGGCTCAACTCAGAAATGG
GATACCCGCATACGTTCGCGCTCATGGAATCCGGTAAACTGTATGCCTTTGGGGGAGGGATCAAAGGCCAGCTTGGTGTC
AAGCTCTCTGAGGGTCAAGAAAGAGCTCAGAACCCAGAGCGAGTCCCGATCGATCTCTGCTAATTTCAACCAGCATTCTG
GTGACCATTTGCAATGACATATTCTGTGATCTGTGGTTAGCATGCCCTCCTGAATTTCATAGGAGGAACTCAAATGTTAG
CATCGATGTAAATACTAGGGGCACTTACCTTTGGTTCTTCTCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis