Browse Element(s) Details


Os.52123.1.S1_at

Description gb:AK064896.1
DB_XREF= gi:32974914
TID=Os.52123.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000L09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000L09, full insert sequence.
FL= gb:AK064896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3838611/11NBS-LRR disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38350Os.54155.1.S1_at11/112+23177262..23180606regulator of chromosome condensation, putative, expressed
LOC_Os02g38360Os.56216.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38360OsAffx.29313.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38370NANA2+23190422..23193828transposon protein, putative, unclassified, expressed
LOC_Os02g38380NANA2+23194524..23200484transposon protein, putative, unclassified
LOC_Os02g38386Os.52123.1.S1_at11/112+23203838..23204587NBS-LRR disease resistance protein, putative, expressed
LOC_Os02g38392Os.51991.1.S1_at11/112+23205840..23214043Leucine Rich Repeat family protein, expressed
LOC_Os02g38400NANA2+23218581..23220069Nuclear protein SkiP, putative
LOC_Os02g38410OsAffx.24631.1.S1_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38410OsAffx.24631.1.S1_s_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38420OsAffx.2906.1.S1_at11/112+23229574..23230095hypothetical protein
LOC_Os02g38420OsAffx.22604.1.S1_x_at1/112+23229574..23230095hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52123.1.S1_at--429--9131Chr02:23203989..23204013 (25 bp)
TGCTGGGAAAGCTTGGCTCCGCCGT
LOC_Os02g38386
Os.52123.1.S1_at--497--5931Chr02:23204059..23204083 (25 bp)
GAGCATCAAGAGCACCCTGGGTATG
LOC_Os02g38386
Os.52123.1.S1_at--30--10511Chr02:23204085..23204109 (25 bp)
TTCAAGCGGTGCTCAGGGATGCCGA
LOC_Os02g38386
Os.52123.1.S1_at--442--4251Chr02:23204118..23204142 (25 bp)
CCGTGAGTGACGAAGGCGCCAGCCT
LOC_Os02g38386
Os.52123.1.S1_at--699--9811Chr02:23204220..23204244 (25 bp)
TAAAAAAGTGTCCTCCCGCTAGGAT
LOC_Os02g38386
Os.52123.1.S1_at--396--771Chr02:23204243..23204267 (25 bp)
ATGTCGTCCTTCACTTCAGTTTTAT
LOC_Os02g38386
Os.52123.1.S1_at--462--10131Chr02:23204275..23204299 (25 bp)
TATGCTCCTCCCGTCAAAAAAGATT
LOC_Os02g38386
Os.52123.1.S1_at--1032--6931Chr02:23204321..23204345 (25 bp)
GTAGTCTCAGCTAGATTCCCTAAGG
LOC_Os02g38386
Os.52123.1.S1_at--1133--8411Chr02:23204467..23204491 (25 bp)
GGCCTAACTGGTTTATAGTGCCCAA
LOC_Os02g38386
Os.52123.1.S1_at--1020--10031Chr02:23204500..23204524 (25 bp)
TAGAGGTTTTGCAGCGTGTTCCAAT
LOC_Os02g38386
Os.52123.1.S1_at--189--2551Chr02:23204530..23204554 (25 bp)
AACTGCTCATTTGCCTTTGTACTGT
LOC_Os02g38386
Target Sequence 
TGCTGGGAAAGCTTGGCTCCGCCGTCGGGGAACAGATCGTGATGCGATGGAACCTGAAGCAAGATCTGGAGAGCATCAAG
AGCACCCTGGGTATGCTTCAAGCGGTGCTCAGGGATGCCGAGAGGCGCTCCGTGAGTGACGAAGGCGCCAGCCTCTGGCT
GAAGAGGCTCAAGAACGCGGCCTACGACATCTCCGACATGCTCGATGAATTCGAAGCCAAGTTATCGGAGGTAAAAAAGT
GTCCTCCCGCTAGGATGTCGTCCTTCACTTCAGTTTTATGCTTATCTATGCTCCTCCCGTCAAAAAAGATTTGACATTTA
GGACAATATTTAGTAGTCTCAGCTAGATTCCCTAAGGCTTTGTTCGGTTTAGAGGGGATTGAAGAGGATTGGAGGGGATT
GATGGGGAATAATTCCACACCATAATAGGTGTGGAATAAATCCCCTCCAATCCCTCTCTCATGGGGTTAACCGAATAAGG
CCTAACTGGTTTATAGTGCCCAACAAGCAAATAGAGGTTTTGCAGCGTGTTCCAATGGGGCAACTGCTCATTTGCCTTTG
TACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis