Browse Element(s) Details


OsAffx.2906.1.S1_at

Description tigr:9630.m03690
TID=OsAffx.2906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3842011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38386Os.52123.1.S1_at11/112+23203838..23204587NBS-LRR disease resistance protein, putative, expressed
LOC_Os02g38392Os.51991.1.S1_at11/112+23205840..23214043Leucine Rich Repeat family protein, expressed
LOC_Os02g38400NANA2+23218581..23220069Nuclear protein SkiP, putative
LOC_Os02g38410OsAffx.24631.1.S1_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38410OsAffx.24631.1.S1_s_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38420OsAffx.2906.1.S1_at11/112+23229574..23230095hypothetical protein
LOC_Os02g38420OsAffx.22604.1.S1_x_at1/112+23229574..23230095hypothetical protein
LOC_Os02g38430Os.47575.1.S1_at11/112+23231286..23235548expressed protein
LOC_Os02g38430Os.20406.3.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38430Os.50575.2.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38440Os.5903.1.A1_at10/112+23235758..23238754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g38450NANA2+23240648..23241168hypothetical protein
LOC_Os02g38460Os.2987.3.S1_x_at2/112+23245931..23248303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38470Os.50593.1.S2_at11/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38470Os.50593.1.S1_at10/112+23249218..23256428B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2906.1.S1_at--391--4671Chr02:23229821..23229845 (25 bp)
GCGTGGTGACCGGAGCACATGCCAT
LOC_Os02g38420
OsAffx.2906.1.S1_at--491--8071Chr02:23229810..23229834 (25 bp)
GGAGCACATGCCATCCGAATTCTGG
LOC_Os02g38420
OsAffx.2906.1.S1_at--208--5631Chr02:23229747..23229771 (25 bp)
GACAAAGATGTCAATAGCCTCGTTT
LOC_Os02g38420
OsAffx.2906.1.S1_at--304--9851Chr02:23229733..23229757 (25 bp)
TAGCCTCGTTTGCAAAAACCGTTGT
LOC_Os02g38420
OsAffx.2906.1.S1_at--405--5371Chr02:23229703..23229727 (25 bp)
GAAGCACCGGAAGCTTTCGCGATTT
LOC_Os02g38420
OsAffx.2906.1.S1_at--730--5331Chr02:23229694..23229718 (25 bp)
GAAGCTTTCGCGATTTGGATCCCGA
LOC_Os02g38420
OsAffx.2906.1.S1_at--613--8551Chr02:23229679..23229703 (25 bp)
TGGATCCCGACCAGGTTTACCAAAT
LOC_Os02g38420
OsAffx.2906.1.S1_at--323--7871Chr02:23229666..23229690 (25 bp)
GGTTTACCAAATTATCTGGAGCCAG
LOC_Os02g38420
OsAffx.2906.1.S1_at--137--3911Chr02:23229651..23229675 (25 bp)
CTGGAGCCAGATCACCTAGAGTTAA
LOC_Os02g38420
OsAffx.2906.1.S1_at--1117--3632Chr03:21303022..21303384 (25 bp)
CTCTACCGGGTGGAGTTGGTCAAAT
NONE
OsAffx.2906.1.S1_at--296--8592Chr07:29127850..29127869 (20 bp)
TGGTCAAATCTGTGCCATTCGGCAT
NONE
Target Sequence 
GCGTGGTGACCGGAGCACATGCCATCCGAATTCTGGACTGCGAGAAGAGAGGCCACAGTGGACAGGGGAAAGAAGACAAA
GATGTCAATAGCCTCGTTTGCAAAAACCGTTGTGCAGGGAAGCACCGGAAGCTTTCGCGATTTGGATCCCGACCAGGTTT
ACCAAATTATCTGGAGCCAGATCACCTAGAGTTAAGTATAACTCTACCGGGTGGAGTTGGTCAAATCTGTGCCATTCGGC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis