Browse Element(s) Details


Os.5903.1.A1_at

Description gb:CR290936
DB_XREF= gi:44677502
DB_XREF=CR290936
CLONE=p641h09p5
TID=Os.5903.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5903 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564905.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3844010/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38392Os.51991.1.S1_at11/112+23205840..23214043Leucine Rich Repeat family protein, expressed
LOC_Os02g38400NANA2+23218581..23220069Nuclear protein SkiP, putative
LOC_Os02g38410OsAffx.24631.1.S1_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38410OsAffx.24631.1.S1_s_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38420OsAffx.2906.1.S1_at11/112+23229574..23230095hypothetical protein
LOC_Os02g38420OsAffx.22604.1.S1_x_at1/112+23229574..23230095hypothetical protein
LOC_Os02g38430Os.47575.1.S1_at11/112+23231286..23235548expressed protein
LOC_Os02g38430Os.20406.3.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38430Os.50575.2.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38440Os.5903.1.A1_at10/112+23235758..23238754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g38450NANA2+23240648..23241168hypothetical protein
LOC_Os02g38460Os.2987.3.S1_x_at2/112+23245931..23248303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38470Os.50593.1.S2_at11/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38470Os.50593.1.S1_at10/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38480Os.26372.1.S1_s_at11/112+23259034..23266080expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042335biological_processcuticle biosynthesis
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5903.1.A1_at--497--4411NONE
GCCACCAAAGCTTACGTTGACCAAT
NONE
Os.5903.1.A1_at--745--391Chr02:23236211..23236235 (25 bp)
ATCAGGAAATCCTCGTTCTTTGTCC
LOC_Os02g38440
Os.5903.1.A1_at--183--4791Chr02:23236163..23236187 (25 bp)
GCTGCCATTCGTCACATAGGCTATG
LOC_Os02g38440
Os.5903.1.A1_at--36--931Chr02:23236146..23236170 (25 bp)
AGGCTATGAGCCGAGGTGCACACCG
LOC_Os02g38440
Os.5903.1.A1_at--763--2971Chr02:23236104..23236128 (25 bp)
AATGTGGTTCCTGATCTCCATTCTC
LOC_Os02g38440
Os.5903.1.A1_at--599--2011Chr02:23236071..23236095 (25 bp)
ACTCATTGACAGCATTCGCCTGGGA
LOC_Os02g38440
Os.5903.1.A1_at--454--6051Chr02:23235961..23235985 (25 bp)
GAGATTTTACTGTTTCCTGAGCATG
LOC_Os02g38440
Os.5903.1.A1_at--762--10831Chr02:23235936..23235960 (25 bp)
TTGGACAAGTACGTGGCTCCGCTGT
LOC_Os02g38440
Os.5903.1.A1_at--793--4791Chr02:23235921..23235945 (25 bp)
GCTCCGCTGTACAACTTCATAGATA
LOC_Os02g38440
Os.5903.1.A1_at--303--3591Chr02:23235891..23235915 (25 bp)
CATTCCCAGTGTTTAGATCGTGAGT
LOC_Os02g38440
Os.5903.1.A1_at--316--5411Chr02:23235838..23235862 (25 bp)
GAACCTGTAGTCCTTGATTTCCTAC
LOC_Os02g38440
Target Sequence 
GCCACCAAAGCTTACGTTGACCAATTCTCAAGATGCCTTTATGTTGAGTACAAGAGCAAGGGTATTGATGTGCAATGCCA
GGTGCCCTTGTATGTGGCAACAAAGATGGCCTCTATCAGGAAATCCTCGTTCTTTGTCCCATCCGCGGACACCTACGCCC
GTGCTGCCATTCGTCACATAGGCTATGAGCCGAGGTGCACACCGTACTGGCCACACTCTGTAATGTGGTTCCTGATCTCC
ATTCTCCCCGAGTCACTCATTGACAGCATTCGCCTGGGAATGTGCATCAAGATCCGCAAGAAGGGGCAAGCCAAAGATGC
TAAGAAGAAAGCGCAGTGATGCTTCAGATTAGTCATTCTTGTTTGAGATTTTACTGTTTCCTGAGCATGTTGGACAAGTA
CGTGGCTCCGCTGTACAACTTCATAGATACATTACATTCCCAGTGTTTAGATCGTGAGTTATATTCCTTCCNCTGATTAT
GAAACATGAACCTGTAGTCCTTGATTTCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5903.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis