Browse Element(s) Details


Os.26372.1.S1_s_at

Description gb:AK105842.1
DB_XREF= gi:32991051
TID=Os.26372.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 24695 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F09, full insert sequence.
FL= gb:AK105842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3848011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38430Os.47575.1.S1_at11/112+23231286..23235548expressed protein
LOC_Os02g38430Os.20406.3.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38430Os.50575.2.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38440Os.5903.1.A1_at10/112+23235758..23238754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g38450NANA2+23240648..23241168hypothetical protein
LOC_Os02g38460Os.2987.3.S1_x_at2/112+23245931..23248303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38470Os.50593.1.S2_at11/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38470Os.50593.1.S1_at10/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38480Os.26372.1.S1_s_at11/112+23259034..23266080expressed protein
LOC_Os02g38490Os.56188.1.S1_at11/112+23266654..23267437expressed protein
LOC_Os02g38499Os.54542.1.S1_at11/112+23280102..23281397F-box domain containing protein, expressed
LOC_Os02g38508NANA2+23281857..23283000expressed protein
LOC_Os02g38520NANA2+23285504..23290910retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26372.1.S1_s_at--338--2271Chr02:23265344..23265368 (25 bp)
AAATCACTGCATACATCCGGCATGA
LOC_Os02g38480
Os.26372.1.S1_s_at--1038--8271Chr02:23265407..23265652 (25 bp)
GGCATCTGGGTCTCAGGGAGCCAAA
LOC_Os02g38480
Os.26372.1.S1_s_at--924--2231Chr02:23265650..23265674 (25 bp)
AAATTCTGATGAACCGGCCTCGTGC
LOC_Os02g38480
Os.26372.1.S1_s_at--434--4831Chr02:23265684..23265708 (25 bp)
GCTCATGGTGTATTGGCTCTTCTTG
LOC_Os02g38480
Os.26372.1.S1_s_at--6--4831Chr02:23265699..23265723 (25 bp)
GCTCTTCTTGCACCTATGGTTGATA
LOC_Os02g38480
Os.26372.1.S1_s_at--57--6511Chr02:23265720..23265744 (25 bp)
GATAGGCAGCATCTTGTGACCATTG
LOC_Os02g38480
Os.26372.1.S1_s_at--205--8931Chr02:23265736..23265760 (25 bp)
TGACCATTGCCCTCGTAGCATAATT
LOC_Os02g38480
Os.26372.1.S1_s_at--285--4191Chr02:23265852..23265876 (25 bp)
CCCTCTGCTCTGAAATTGTACTCGA
LOC_Os02g38480
Os.26372.1.S1_s_at--347--1533Chr02:23330565..23330589 (25 bp)
AGCAGTACGTGTTGAGTTCCGCACA
NONE
Os.26372.1.S1_s_at--1002--6971Chr02:23265935..23265959 (25 bp)
GTACCATTCTTTGTTACGCTGTAGA
LOC_Os02g38480
Os.26372.1.S1_s_at--247--133Chr02:23330671..23330695 (25 bp)
ATTCATCATGGTTTCTTCGGGAAGC
NONE
Target Sequence 
AAATCACTGCATACATCCGGCATGATTCCAGCACAAGGAAAACAGATTGCTGATAGGGTTGATGGCATCTGGGTCTCAGG
GAGCCAAATTCTGATGAACCGGCCTCGTGCAAGGCTAGGGCTCATGGTGTATTGGCTCTTCTTGCACCTATGGTTGATAG
GCAGCATCTTGTGACCATTGCCCTCGTAGCATAATTGTACAATACTAGCAGATATATTCACAGTTTTATTTTCTTTCTTC
TTAACTTAACTATACCTGGTACATATGGCATTCTTTTCATTTCCCTGCCCTCTGCTCTGAAATTGTACTCGAGCAGTACG
TGTTGAGTTCCGCACACAGAATGTAATACGTGCAGAATAGAACAATACTAGTACCATTCTTTGTTACGCTGTAGAAGTGG
ATGTTTCTGTTGTAACCATGATAAATTCATCATGGTTTCTTCGGGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26372.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis