Browse Element(s) Details


Os.54542.1.S1_at

Description gb:AK105564.1
DB_XREF= gi:32990773
TID=Os.54542.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C03, full insert sequence.
FL= gb:AK105564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3849911/11F-box domain containing protein, expressed
LOC_Os02g385899/11F-box domain containing protein
LOC_Os02g387202/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38470Os.50593.1.S2_at11/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38470Os.50593.1.S1_at10/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38480Os.26372.1.S1_s_at11/112+23259034..23266080expressed protein
LOC_Os02g38490Os.56188.1.S1_at11/112+23266654..23267437expressed protein
LOC_Os02g38499Os.54542.1.S1_at11/112+23280102..23281397F-box domain containing protein, expressed
LOC_Os02g38508NANA2+23281857..23283000expressed protein
LOC_Os02g38520NANA2+23285504..23290910retrotransposon protein, putative, unclassified
LOC_Os02g38530Os.53142.1.S1_at3/112+23292576..23292991transposon protein, putative, unclassified
LOC_Os02g38540NANA2+23296233..23298128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38550NANA2+23298381..23302901retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38560NANA2+23305152..23306879retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54542.1.S1_at--399--10752Chr02:23327104..23327128 (25 bp)
TTGATAGCCACCTGTTTGAGTCCGA
LOC_Os02g38589
Os.54542.1.S1_at--674--8592Chr02:23327043..23327067 (25 bp)
TGGTGCGCCTATCCATGTCGTCAAG
LOC_Os02g38589
Os.54542.1.S1_at--334--2933Chr02:23399760..23399784 (25 bp)
AAGGACATGCGTTGTTCACCGGGAC
LOC_Os02g38720
Os.54542.1.S1_at--676--9312Chr02:23326894..23326918 (25 bp)
TCCCGAGGCTGTATGACTGGCCTGA
LOC_Os02g38589
Os.54542.1.S1_at--756--4472Chr02:23326875..23326899 (25 bp)
GCCTGAGACTATCCATGTCGACATT
LOC_Os02g38589
Os.54542.1.S1_at--55--5672Chr02:23326856..23326880 (25 bp)
GACATTGTTACACGTGATGGCGAAA
LOC_Os02g38589
Os.54542.1.S1_at--652--6972Chr02:23326823..23326847 (25 bp)
GTACCAAAGTCATCCAGTTCGTCTA
LOC_Os02g38589
Os.54542.1.S1_at--1093--2133Chr02:23326798..23326822 (25 bp)
ACACCAAGGAGATCACCTCGGACAT
LOC_Os02g38589
Os.54542.1.S1_at--670--192Chr02:23326769..23326793 (25 bp)
ATTTGGTTCTACGAGTTTGGGCAGC
LOC_Os02g38589
Os.54542.1.S1_at--635--5752Chr02:23326665..23326689 (25 bp)
GACGTTGTTAGCTCTTATATTTTCA
NONE
Os.54542.1.S1_at--477--5332Chr02:23326619..23326643 (25 bp)
GAAGTTACTCTTCTTTCAGGCCAAA
NONE
Target Sequence 
TTGATAGCCACCTGTTTGAGTCCGACCAAGGCGCGCTCATGGCTGTCCTCGTCGGCTACAGTGGTGCGCCTATCCATGTC
GTCAAGCTCAACGAAGAGACGATGGAGTGGGAGAAGATGCGGTCATTGGAAGGACATGCGTTGTTCACCGGGACATACAC
GACAATGTTGAGGAAGACTAAGCTTAGATTGATGCAAAACAAGGTGTTCCTCCCGAGGCTGTATGACTGGCCTGAGACTA
TCCATGTCGACATTGTTACACGTGATGGCGAAACAGCATTTGTACCAAAGTCATCCAGTTCGTCTAACACCAAGGAGATC
ACCTCGGACATAAATATTTGGTTCTACGAGTTTGGGCAGCAAGACGCAAGAGAGTTTTGGGGATCGGAGAGAGTAGATTA
TAGTATTTGGGTTGATTTTAGTACTAATTGACACAAATTGACGTTGTTAGCTCTTATATTTTCATATAGTGAATCATCTC
ACAATGAAGTTACTCTTCTTTCAGGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis