Browse Element(s) Details


Os.50575.2.S1_x_at

Description gb:AK121909.1
DB_XREF= gi:37991532
TID=Os.50575.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105O12, full insert sequence.
FL= gb:AK121909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4070011/11expressed protein
LOC_Os02g384301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40650Os.28791.1.A1_at9/114+23910466..23914147neutral zinc metallopeptidase, putative, expressed
LOC_Os04g40660Os.22519.1.A1_at10/114+23914881..23919303MA3 domain-containing protein, putative, expressed
LOC_Os04g40670Os.53802.1.S1_at11/114+23920272..23923315expressed protein
LOC_Os04g40680Os.50596.1.S1_at6/114+23926935..23928467ubiquitin family protein, putative
LOC_Os04g40690OsAffx.20313.1.S1_x_at2/114+23931957..23933982hypothetical protein
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50575.2.S1_x_at--477--5751Chr04:23939556..23939580 (25 bp)
GACGTGAAAGACCTGCTTTTCCACT
LOC_Os04g40700
Os.50575.2.S1_x_at--462--5091Chr04:23939616..23939640 (25 bp)
GCACCTCCTGATAACAAGCCATATG
LOC_Os04g40700
Os.50575.2.S1_x_at--585--1251Chr04:23939977..23940001 (25 bp)
AGATTGCTCGATATTCCTGGTGCTT
LOC_Os04g40700
Os.50575.2.S1_x_at--495--2991Chr04:23940039..23940063 (25 bp)
AATGTTCACGCTGATTGCCATCTAC
LOC_Os04g40700
Os.50575.2.S1_x_at--256--2292Chr04:23940064..23940088 (25 bp)
AAATGCCCTGTGATGCTTTTCAAAG
LOC_Os04g40700
Os.50575.2.S1_x_at--977--1331Chr04:23940123..23940147 (25 bp)
AGAGGGACCTTTTCTGGAGACAGCT
LOC_Os04g40700
Os.50575.2.S1_x_at--207--8051Chr04:23940138..23940162 (25 bp)
GGAGACAGCTTGTGTGCCGTTCGCA
LOC_Os04g40700
Os.50575.2.S1_x_at--1088--191Chr04:23940186..23940210 (25 bp)
ATTTGCCGTAGTGGGAGCTGTTCTC
LOC_Os04g40700
Os.50575.2.S1_x_at--108--7331Chr04:23940248..23940268 (21 bp)
GTGCAGTCGTGGCTTATCAGGAATC
LOC_Os04g40700
Os.50575.2.S1_x_at--849--10431Chr04:23940417..23940441 (25 bp)
TTATGTTGTCTCATCTGTGTCCATC
LOC_Os04g40700
Os.50575.2.S1_x_at--296--851Chr04:23940472..23940496 (25 bp)
ATGGCACCGGGATCTTGTTTTCCGA
LOC_Os04g40700
Target Sequence 
GACGTGAAAGACCTGCTTTTCCACTCCTATTTTTCTATTATGGACGATCTTCGTCTTCAGGCACCTCCTGATAACAAGCC
ATATGAGATAAGATTGCTCGATATTCCTGGTGCTTTATTATCTGCTGCATGTGGACTCATACTGGATGGTATAATGTTCA
CGCTGATTGCCATCTACAAATGCCCTGTGATGCTTTTCAAAGGATGGAAACGACTGATTCAGGATATGATTGGGAGAGAG
GGACCTTTTCTGGAGACAGCTTGTGTGCCGTTCGCAGGTCTTGCTATTCTTCTCTGGCCATTTGCCGTAGTGGGAGCTGT
TCTCGCCTCCATCCTATCCAGTATTCCTTTAGGCGCATTTGGTGCAGTCGTGGCTTATCAGGAATCCTCCCTAAAGATGG
GCTTATCTTATGTTGTCTCATCTGTGTCCATCTTTGATGAATACACAAATGATGTGCTTGACATGGCACCGGGATCTTGT
TTTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50575.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis