Browse Element(s) Details


Os.22519.1.A1_at

Description gb:AK068497.1
DB_XREF= gi:32978515
TID=Os.22519.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155G23, full insert sequence.
FL= gb:AK068497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4066010/11MA3 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40620NANA4+23889996..23890663Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40640Os.51647.1.S1_at1/114+23906872..23907222hypothetical protein
LOC_Os04g40650Os.28791.1.A1_at9/114+23910466..23914147neutral zinc metallopeptidase, putative, expressed
LOC_Os04g40660Os.22519.1.A1_at10/114+23914881..23919303MA3 domain-containing protein, putative, expressed
LOC_Os04g40670Os.53802.1.S1_at11/114+23920272..23923315expressed protein
LOC_Os04g40680Os.50596.1.S1_at6/114+23926935..23928467ubiquitin family protein, putative
LOC_Os04g40690OsAffx.20313.1.S1_x_at2/114+23931957..23933982hypothetical protein
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22519.1.A1_at--233--1551Chr04:23915290..23915314 (25 bp)
AGCATATGTGGATCTCGCAACTGAA
LOC_Os04g40660
Os.22519.1.A1_at--533--5151Chr04:23915274..23915298 (25 bp)
GCAACTGAACGTGGATGGCTGCTTC
LOC_Os04g40660
Os.22519.1.A1_at--713--10631Chr04:23915244..23915268 (25 bp)
TTCGCCTAGGCGGTTAAACTTGATG
LOC_Os04g40660
Os.22519.1.A1_at--1016--3811Chr04:23915193..23915217 (25 bp)
CTGCTGTCTTTAGCACCATACCAAA
LOC_Os04g40660
Os.22519.1.A1_at--604--1191Chr04:23915168..23915192 (25 bp)
AGTTTTCCTGTTCCTAGTGTACTTG
LOC_Os04g40660
Os.22519.1.A1_at--1111--7011Chr04:23915150..23915174 (25 bp)
GTACTTGTTGTGTTACCGTATACCG
LOC_Os04g40660
Os.22519.1.A1_at--1138--9731Chr04:23914958..23914982 (25 bp)
TAATTAGCTGGCGATGGGCTTCCAG
LOC_Os04g40660
Os.22519.1.A1_at--658--4911Chr04:23914934..23914958 (25 bp)
GCTTCTGAAGCTCCGTCATTGTGAA
LOC_Os04g40660
Os.22519.1.A1_at--225--8691Chr04:23914915..23914939 (25 bp)
TGTGAATGTGCTTGCCCATCTTTGC
LOC_Os04g40660
Os.22519.1.A1_at--1142--9131Chr04:23914903..23914927 (25 bp)
TGCCCATCTTTGCTGCTTAAATTTC
LOC_Os04g40660
Os.22519.1.A1_at--911--2271NONE
AAATCGGTGTCTGCCTTTGATGACA
NONE
Target Sequence 
AGCATATGTGGATCTCGCAACTGAACGTGGATGGCTGCTTCCACCCTTCGCCTAGGCGGTTAAACTTGATGAATNTTCTC
AATGTACATCTCCACCCCTGCTGTCTTTAGCACCATACCAAAAGTTTTCCTGTTCCTAGTGTACTTGTTGTGTTACCGTA
TACCGGAGGATGATAGGTTGGTTGGCCGTGTTGGTACTTGTTGAGGTAGTGTTCATCATTGGTTTGGTTTGGGAGTTTAT
GCCCTGGGAGAGTTATGAATAACCATATCGTTTCAGGTTATGACATGCTATGCAATGAACAATAGAGCTGTTCATGACCA
GTGGAATTTTTGTAATTAGCTGGCGATGGGCTTCCAGCTTCTGAAGCTCCGTCATTGTGAATGTGCTTGCCCATCTTTGC
TGCTTAAATTTCAATTGNTNNNGGATACTTTTATATATCATCATCTGCCACATATCCATCCTCTTTTTTTTGTTTTGTTT
AGNCCTGCTTAGGAGGAGTGACTANTTAGAGTCCATCTTTTTTTTTTTGTTTAGCCTGCTTAGGGGGATACTATTAATGA
AATCGGTGTCTGCCTTTGATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22519.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis